miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24085 5' -56.7 NC_005262.1 + 52132 0.66 0.6594
Target:  5'- aAGCUCUG-CCGGCCaGCGuGCAgcgCGa -3'
miRNA:   3'- cUCGAGAUgGGCCGG-CGCuUGUa--GUa -5'
24085 5' -56.7 NC_005262.1 + 42393 0.66 0.6594
Target:  5'- cGAGCUCggACCaGuGCCGCaaGACGUCAUc -3'
miRNA:   3'- -CUCGAGa-UGGgC-CGGCGc-UUGUAGUA- -5'
24085 5' -56.7 NC_005262.1 + 47234 0.66 0.6594
Target:  5'- -uGCUCggcauCCgCGGCCGUGAACGggagCGg -3'
miRNA:   3'- cuCGAGau---GG-GCCGGCGCUUGUa---GUa -5'
24085 5' -56.7 NC_005262.1 + 46921 0.66 0.64847
Target:  5'- -uGCg--GCCCGGCgCGCGGccgggcgccuGCAUCAg -3'
miRNA:   3'- cuCGagaUGGGCCG-GCGCU----------UGUAGUa -5'
24085 5' -56.7 NC_005262.1 + 13669 0.66 0.64847
Target:  5'- -cGCUCcACUCGGUCaGCGAGCGcUCGg -3'
miRNA:   3'- cuCGAGaUGGGCCGG-CGCUUGU-AGUa -5'
24085 5' -56.7 NC_005262.1 + 11197 0.66 0.637525
Target:  5'- cAGCUC-GCCCGGCuuuaCGCGGuaguCGUCGc -3'
miRNA:   3'- cUCGAGaUGGGCCG----GCGCUu---GUAGUa -5'
24085 5' -56.7 NC_005262.1 + 4435 0.66 0.637525
Target:  5'- gGAGCUCggcgUugCCGGCguacuuUGCGAugAUCGc -3'
miRNA:   3'- -CUCGAG----AugGGCCG------GCGCUugUAGUa -5'
24085 5' -56.7 NC_005262.1 + 41573 0.66 0.626575
Target:  5'- uGGGCg--GCgCGGCCGUGAGCuuGUCGa -3'
miRNA:   3'- -CUCGagaUGgGCCGGCGCUUG--UAGUa -5'
24085 5' -56.7 NC_005262.1 + 31575 0.66 0.626575
Target:  5'- cGAGCUCgaAUCCGacGCCGgCGAucGCAUCAc -3'
miRNA:   3'- -CUCGAGa-UGGGC--CGGC-GCU--UGUAGUa -5'
24085 5' -56.7 NC_005262.1 + 51525 0.66 0.61563
Target:  5'- cGGCUCg--CCGGCCGCGAuCGaCAg -3'
miRNA:   3'- cUCGAGaugGGCCGGCGCUuGUaGUa -5'
24085 5' -56.7 NC_005262.1 + 40812 0.66 0.61563
Target:  5'- cGGCaUCUACggGGCUGCGAcggGCAUCAg -3'
miRNA:   3'- cUCG-AGAUGggCCGGCGCU---UGUAGUa -5'
24085 5' -56.7 NC_005262.1 + 53345 0.67 0.572082
Target:  5'- cGGCUUccGCCCGGCuUGCcGAGCAUCu- -3'
miRNA:   3'- cUCGAGa-UGGGCCG-GCG-CUUGUAGua -5'
24085 5' -56.7 NC_005262.1 + 28238 0.67 0.572082
Target:  5'- -cGCUCUuuCCCGcGCCGgCGAgcgACAUCGc -3'
miRNA:   3'- cuCGAGAu-GGGC-CGGC-GCU---UGUAGUa -5'
24085 5' -56.7 NC_005262.1 + 2198 0.67 0.561296
Target:  5'- -cGCuUCUGCUCGGUCGaGAGCGUCu- -3'
miRNA:   3'- cuCG-AGAUGGGCCGGCgCUUGUAGua -5'
24085 5' -56.7 NC_005262.1 + 25280 0.67 0.561296
Target:  5'- uAGCUCUugCCGGCCGUgcccccggaGAGCcacaccuUCAc -3'
miRNA:   3'- cUCGAGAugGGCCGGCG---------CUUGu------AGUa -5'
24085 5' -56.7 NC_005262.1 + 34130 0.67 0.550566
Target:  5'- uGGGCgggCUGCgCGGgCGCGGGCggCAUg -3'
miRNA:   3'- -CUCGa--GAUGgGCCgGCGCUUGuaGUA- -5'
24085 5' -56.7 NC_005262.1 + 57032 0.68 0.5399
Target:  5'- cGGCaUCgUGCCCGGCCaCGAGCA-CAa -3'
miRNA:   3'- cUCG-AG-AUGGGCCGGcGCUUGUaGUa -5'
24085 5' -56.7 NC_005262.1 + 15683 0.68 0.5399
Target:  5'- cGAGCUCUugCgCGcGgCGCGucACAUCAUc -3'
miRNA:   3'- -CUCGAGAugG-GC-CgGCGCu-UGUAGUA- -5'
24085 5' -56.7 NC_005262.1 + 10199 0.68 0.529304
Target:  5'- cGAGCggcgACgCGGuuGCGAACAUCc- -3'
miRNA:   3'- -CUCGaga-UGgGCCggCGCUUGUAGua -5'
24085 5' -56.7 NC_005262.1 + 9983 0.68 0.498008
Target:  5'- cAGCUCgaUGCCCGuGCCGCugucGAccuGCAUCAg -3'
miRNA:   3'- cUCGAG--AUGGGC-CGGCG----CU---UGUAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.