miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 60116 0.66 0.527572
Target:  5'- -gUCGGGCacgAGGGCGCCaGCgucGCGGCg -3'
miRNA:   3'- gaAGCUCG---UCUUGCGG-CGgc-CGCCGa -5'
24086 3' -60 NC_005262.1 + 26577 0.66 0.527572
Target:  5'- gUUCGcGCAGGcauaCGCUGGCGGCc -3'
miRNA:   3'- gAAGCuCGUCUugcgGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 3578 0.66 0.527572
Target:  5'- cCUUC-AGCAGcuUGCCgaccucGCCGGcCGGCUc -3'
miRNA:   3'- -GAAGcUCGUCuuGCGG------CGGCC-GCCGA- -5'
24086 3' -60 NC_005262.1 + 9942 0.66 0.524517
Target:  5'- -cUUGAGCGcGAucugcuugccguccGCGCCgcGCCGGUGGUc -3'
miRNA:   3'- gaAGCUCGU-CU--------------UGCGG--CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 52811 0.66 0.517415
Target:  5'- aUUCGcaguGGCAG-GCGCuCGgCGaGCGGCUg -3'
miRNA:   3'- gAAGC----UCGUCuUGCG-GCgGC-CGCCGA- -5'
24086 3' -60 NC_005262.1 + 1904 0.66 0.517415
Target:  5'- cCUUCGAGCGGGGCGgagggUGCgGGUugcguGGCUc -3'
miRNA:   3'- -GAAGCUCGUCUUGCg----GCGgCCG-----CCGA- -5'
24086 3' -60 NC_005262.1 + 33976 0.66 0.514383
Target:  5'- -gUCGAGCugcuGGACGUCGUgcguaacaugggcgCGGaCGGCg -3'
miRNA:   3'- gaAGCUCGu---CUUGCGGCG--------------GCC-GCCGa -5'
24086 3' -60 NC_005262.1 + 49720 0.66 0.514383
Target:  5'- --cCGGGCGGcgaaccGGCgGCCgaagccgcaccgacGCCGGCGGCg -3'
miRNA:   3'- gaaGCUCGUC------UUG-CGG--------------CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 47717 0.66 0.511358
Target:  5'- --cCGGGCGGcggcucgccgccuguAucugguGCGCCGCCGGCcgcGGCg -3'
miRNA:   3'- gaaGCUCGUC---------------U------UGCGGCGGCCG---CCGa -5'
24086 3' -60 NC_005262.1 + 41211 0.66 0.507336
Target:  5'- gCUUCGAGCAccguAUGaCUGCCGGCacGCUc -3'
miRNA:   3'- -GAAGCUCGUcu--UGC-GGCGGCCGc-CGA- -5'
24086 3' -60 NC_005262.1 + 10487 0.66 0.507336
Target:  5'- --gCGAccaGCAGcAGCGCCaGCaUGGCGGCc -3'
miRNA:   3'- gaaGCU---CGUC-UUGCGG-CG-GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 31918 0.66 0.507336
Target:  5'- -cUCGAcGCGccGGACGUCGCCaccugcuguacGGCGGUg -3'
miRNA:   3'- gaAGCU-CGU--CUUGCGGCGG-----------CCGCCGa -5'
24086 3' -60 NC_005262.1 + 29578 0.66 0.506333
Target:  5'- -gUCGAGCGuguCGCCcgaagccgcgaucGCgGGCGGCa -3'
miRNA:   3'- gaAGCUCGUcuuGCGG-------------CGgCCGCCGa -5'
24086 3' -60 NC_005262.1 + 43271 0.66 0.50133
Target:  5'- cCUUCGAGUGGGgugaggucgucgcgaGCGCCGCgccgaUGGUGcGCg -3'
miRNA:   3'- -GAAGCUCGUCU---------------UGCGGCG-----GCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 21349 0.66 0.497343
Target:  5'- --gCGAGCGGuagauGCGCUGCuucgugauguugCGGCcGGCUg -3'
miRNA:   3'- gaaGCUCGUCu----UGCGGCG------------GCCG-CCGA- -5'
24086 3' -60 NC_005262.1 + 12461 0.66 0.497343
Target:  5'- -gUCGAGacgucgcucaCGGGGCGCCGC--GCGGCa -3'
miRNA:   3'- gaAGCUC----------GUCUUGCGGCGgcCGCCGa -5'
24086 3' -60 NC_005262.1 + 2562 0.66 0.497343
Target:  5'- --aCGAuccGCgAGAACGUCucggagacgaGCCGGCGGCc -3'
miRNA:   3'- gaaGCU---CG-UCUUGCGG----------CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 13778 0.66 0.497343
Target:  5'- -cUCGGGCuucacuucGGugGgCGCCGGCgcGGCUu -3'
miRNA:   3'- gaAGCUCGu-------CUugCgGCGGCCG--CCGA- -5'
24086 3' -60 NC_005262.1 + 43567 0.66 0.497343
Target:  5'- -aUCG-GCAaauuGGGCGCUGCgauugaGGCGGCUu -3'
miRNA:   3'- gaAGCuCGU----CUUGCGGCGg-----CCGCCGA- -5'
24086 3' -60 NC_005262.1 + 15060 0.66 0.496348
Target:  5'- gUUCGAGCAGGcaugguCGCUguacccgccucggGCCGGaGGCa -3'
miRNA:   3'- gAAGCUCGUCUu-----GCGG-------------CGGCCgCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.