miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 10487 0.66 0.507336
Target:  5'- --gCGAccaGCAGcAGCGCCaGCaUGGCGGCc -3'
miRNA:   3'- gaaGCU---CGUC-UUGCGG-CG-GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 43466 0.66 0.477628
Target:  5'- -aUCGAGUcGA--GCCGCUucguGGCGGCg -3'
miRNA:   3'- gaAGCUCGuCUugCGGCGG----CCGCCGa -5'
24086 3' -60 NC_005262.1 + 9466 0.66 0.474704
Target:  5'- -aUCGAGguGccgagcgcgucgauGACGUC-CUGGCGGCUc -3'
miRNA:   3'- gaAGCUCguC--------------UUGCGGcGGCCGCCGA- -5'
24086 3' -60 NC_005262.1 + 56765 0.66 0.476652
Target:  5'- -gUCGGGCGacGAGCGCUacaugaaGCUGGcCGGCc -3'
miRNA:   3'- gaAGCUCGU--CUUGCGG-------CGGCC-GCCGa -5'
24086 3' -60 NC_005262.1 + 45518 0.66 0.477628
Target:  5'- -aUCGAGCGccacGAGCGCauuGCacugcaauuuucCGGCGGCa -3'
miRNA:   3'- gaAGCUCGU----CUUGCGg--CG------------GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 6553 0.66 0.487438
Target:  5'- gCUUCG-GCGuguUGCCGCCGacgaGCGGCg -3'
miRNA:   3'- -GAAGCuCGUcuuGCGGCGGC----CGCCGa -5'
24086 3' -60 NC_005262.1 + 18294 0.66 0.487438
Target:  5'- uUUCGGGUAGGcGCGCCGguUCGcuucGCGGCg -3'
miRNA:   3'- gAAGCUCGUCU-UGCGGC--GGC----CGCCGa -5'
24086 3' -60 NC_005262.1 + 29653 0.66 0.487438
Target:  5'- --gCGAGCGGcAUGCCGCCcGCGcccGCg -3'
miRNA:   3'- gaaGCUCGUCuUGCGGCGGcCGC---CGa -5'
24086 3' -60 NC_005262.1 + 15060 0.66 0.496348
Target:  5'- gUUCGAGCAGGcaugguCGCUguacccgccucggGCCGGaGGCa -3'
miRNA:   3'- gAAGCUCGUCUu-----GCGG-------------CGGCCgCCGa -5'
24086 3' -60 NC_005262.1 + 2562 0.66 0.497343
Target:  5'- --aCGAuccGCgAGAACGUCucggagacgaGCCGGCGGCc -3'
miRNA:   3'- gaaGCU---CG-UCUUGCGG----------CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 12461 0.66 0.497343
Target:  5'- -gUCGAGacgucgcucaCGGGGCGCCGC--GCGGCa -3'
miRNA:   3'- gaAGCUC----------GUCUUGCGGCGgcCGCCGa -5'
24086 3' -60 NC_005262.1 + 10957 0.67 0.420967
Target:  5'- --gCGcAGCAGGcauucGCGCUGUCGGCGcGCc -3'
miRNA:   3'- gaaGC-UCGUCU-----UGCGGCGGCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 49340 0.67 0.436614
Target:  5'- --aCGAGCAGGcgcGCGCCGCgcucgcugacgacuCGGCGacGCg -3'
miRNA:   3'- gaaGCUCGUCU---UGCGGCG--------------GCCGC--CGa -5'
24086 3' -60 NC_005262.1 + 49822 0.67 0.438477
Target:  5'- -aUCG-GCcgcgcgauGGAGCGCgcgaauggcccggUGCCGGCGGCg -3'
miRNA:   3'- gaAGCuCG--------UCUUGCG-------------GCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 63549 0.67 0.43941
Target:  5'- --aCGuccGCGcGAAaugucccgcCGCCGCCGGCGGUa -3'
miRNA:   3'- gaaGCu--CGU-CUU---------GCGGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 48190 0.67 0.43941
Target:  5'- uUUCGGcacGCGGGacaguaauaaggGCGCgGUCGGUGGCa -3'
miRNA:   3'- gAAGCU---CGUCU------------UGCGgCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 51500 0.67 0.467916
Target:  5'- -aUCGAGCGGAucgGCCGCaaCGGCGa-- -3'
miRNA:   3'- gaAGCUCGUCUug-CGGCG--GCCGCcga -5'
24086 3' -60 NC_005262.1 + 58693 0.67 0.458306
Target:  5'- --gCGAGC---GCGCaacaaGCUGGCGGCa -3'
miRNA:   3'- gaaGCUCGucuUGCGg----CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 49961 0.67 0.467916
Target:  5'- gUUCGAGCcGAuCGCCGacgagaCaGCGGCg -3'
miRNA:   3'- gAAGCUCGuCUuGCGGCg-----GcCGCCGa -5'
24086 3' -60 NC_005262.1 + 40331 0.67 0.420967
Target:  5'- gCUUCGAGCAucG-GCUcacgGCCGGCGcGCUg -3'
miRNA:   3'- -GAAGCUCGUcuUgCGG----CGGCCGC-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.