Results 61 - 80 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24086 | 3' | -60 | NC_005262.1 | + | 36992 | 0.68 | 0.394198 |
Target: 5'- --cCGAGCcccaAGAACGUCGgcgagacggacaUCGGCGGCg -3' miRNA: 3'- gaaGCUCG----UCUUGCGGC------------GGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 41661 | 0.68 | 0.402998 |
Target: 5'- uUUCcGGCGGcgccgucauCGCCGCCGGCaccGGCa -3' miRNA: 3'- gAAGcUCGUCuu-------GCGGCGGCCG---CCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 32876 | 0.68 | 0.408338 |
Target: 5'- --cCGAGCuguucgccgcgucGAACGUCggccaaGCCGGCGGCg -3' miRNA: 3'- gaaGCUCGu------------CUUGCGG------CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 7630 | 0.68 | 0.411922 |
Target: 5'- --aCGuuGGCcGAAUGUcgaCGCCGGCGGCg -3' miRNA: 3'- gaaGC--UCGuCUUGCG---GCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 61134 | 0.69 | 0.336188 |
Target: 5'- --gCGGcCAGGACGCCGCCcGGCGccGCg -3' miRNA: 3'- gaaGCUcGUCUUGCGGCGG-CCGC--CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 57224 | 0.69 | 0.328427 |
Target: 5'- -aUgGAGCcuGAucGCGCCGCucguCGGCGGCa -3' miRNA: 3'- gaAgCUCGu-CU--UGCGGCG----GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 16049 | 0.69 | 0.320799 |
Target: 5'- --cCGGGUucgcCGCgGCCGGCGGCg -3' miRNA: 3'- gaaGCUCGucuuGCGgCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 43323 | 0.69 | 0.360267 |
Target: 5'- --cCGAGgAGGAaGCCGCUgaacaGGCGGCg -3' miRNA: 3'- gaaGCUCgUCUUgCGGCGG-----CCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 12263 | 0.69 | 0.360267 |
Target: 5'- -gUCGGGCAccugucGAuCGCgGCCGGCGaGCc -3' miRNA: 3'- gaAGCUCGU------CUuGCGgCGGCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 60489 | 0.69 | 0.344082 |
Target: 5'- -aUCaGGGCGaGACGCCggGCCGcGCGGCg -3' miRNA: 3'- gaAG-CUCGUcUUGCGG--CGGC-CGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 33619 | 0.69 | 0.344082 |
Target: 5'- --aCGucGCAGGAaaaGCCGCCGGCgcagguguccgaGGCUg -3' miRNA: 3'- gaaGCu-CGUCUUg--CGGCGGCCG------------CCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 56894 | 0.69 | 0.336188 |
Target: 5'- -gUCGAGCGcGAcaacACGCuCGCCGGCGa-- -3' miRNA: 3'- gaAGCUCGU-CU----UGCG-GCGGCCGCcga -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 34483 | 0.69 | 0.328427 |
Target: 5'- gUUCGAGCAcau--CCGCgCGGCGGCg -3' miRNA: 3'- gAAGCUCGUcuugcGGCG-GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 4592 | 0.69 | 0.320799 |
Target: 5'- -cUCGGGCGuGAGCGcCCGCaggaacgGGCGGUg -3' miRNA: 3'- gaAGCUCGU-CUUGC-GGCGg------CCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 1328 | 0.69 | 0.320799 |
Target: 5'- aCUUCaGAGCgcGGAuacgauuCGCCGCCucGGUGGCg -3' miRNA: 3'- -GAAG-CUCG--UCUu------GCGGCGG--CCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 31031 | 0.7 | 0.313305 |
Target: 5'- gUUCGAGCGGAAguacCGCCuGCUGGU-GCUg -3' miRNA: 3'- gAAGCUCGUCUU----GCGG-CGGCCGcCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 7523 | 0.7 | 0.313305 |
Target: 5'- -aUCGGGCAGGuucgGCgGCgCGUCGGCGcGCUc -3' miRNA: 3'- gaAGCUCGUCU----UG-CG-GCGGCCGC-CGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 5188 | 0.7 | 0.305944 |
Target: 5'- --gCGGGCGcGGGCGCgGCCGGCG-Cg -3' miRNA: 3'- gaaGCUCGU-CUUGCGgCGGCCGCcGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 12803 | 0.7 | 0.291621 |
Target: 5'- -aUUGGGCGGcGCGCaGCCGGCGcGUg -3' miRNA: 3'- gaAGCUCGUCuUGCGgCGGCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 48344 | 0.7 | 0.298716 |
Target: 5'- -cUCG-GCAcGAccgacccgGCGCUGCUGGCGGCc -3' miRNA: 3'- gaAGCuCGU-CU--------UGCGGCGGCCGCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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