Results 101 - 117 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24086 | 3' | -60 | NC_005262.1 | + | 222 | 0.72 | 0.216588 |
Target: 5'- ---gGAGcCAGAcACGCuacCGCCGGCGGCg -3' miRNA: 3'- gaagCUC-GUCU-UGCG---GCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 4813 | 0.72 | 0.210606 |
Target: 5'- --aCGGcGCGGGaggcgugAgGCCGCCGGCGGCc -3' miRNA: 3'- gaaGCU-CGUCU-------UgCGGCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 12575 | 0.72 | 0.205819 |
Target: 5'- -gUCGAGCugcuGCuGCCGCCGGCgaGGCg -3' miRNA: 3'- gaAGCUCGucu-UG-CGGCGGCCG--CCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 33319 | 0.72 | 0.227261 |
Target: 5'- -gUCGAGuCGGAcgcaacuGCGUCGCUGcGCGGCa -3' miRNA: 3'- gaAGCUC-GUCU-------UGCGGCGGC-CGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 57404 | 0.72 | 0.227835 |
Target: 5'- -aUCGAGCuGAcCGCCGagaaGGCGGCc -3' miRNA: 3'- gaAGCUCGuCUuGCGGCgg--CCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 34128 | 0.72 | 0.233642 |
Target: 5'- -gUUGGGCGGGcuGCGCgggCGCgGGCGGCa -3' miRNA: 3'- gaAGCUCGUCU--UGCG---GCGgCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 11076 | 0.73 | 0.195013 |
Target: 5'- aCUUCGucAGCAGcgcggccucguccGGCGUCgGCCGGCGGCc -3' miRNA: 3'- -GAAGC--UCGUC-------------UUGCGG-CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 46802 | 0.73 | 0.190536 |
Target: 5'- --aCGAGCGc-GCGCUcgGCCGGCGGCa -3' miRNA: 3'- gaaGCUCGUcuUGCGG--CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 12100 | 0.73 | 0.176259 |
Target: 5'- uUUCGGGCGcaaucAGCGCCGCCGuGCGcGCg -3' miRNA: 3'- gAAGCUCGUc----UUGCGGCGGC-CGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 32675 | 0.73 | 0.195516 |
Target: 5'- gCUUCGAGUuc-GCGCUGCCGGCcgccGGCc -3' miRNA: 3'- -GAAGCUCGucuUGCGGCGGCCG----CCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 55411 | 0.73 | 0.195516 |
Target: 5'- -aUCGAGCAgcucGAGCGCCgGCUGGaGGCg -3' miRNA: 3'- gaAGCUCGU----CUUGCGG-CGGCCgCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 44958 | 0.74 | 0.150536 |
Target: 5'- ---gGAGCAGAugGCCGCCGa-GGCg -3' miRNA: 3'- gaagCUCGUCUugCGGCGGCcgCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 33164 | 0.74 | 0.162514 |
Target: 5'- --gCGGGCAccuugccGAGCGUCGgCGGCGGCUc -3' miRNA: 3'- gaaGCUCGU-------CUUGCGGCgGCCGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 52690 | 0.77 | 0.10026 |
Target: 5'- -cUCGAGCAGGAagGCCGCCGGCcgacgccggacgaGGCc -3' miRNA: 3'- gaAGCUCGUCUUg-CGGCGGCCG-------------CCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 14044 | 0.8 | 0.057847 |
Target: 5'- -cUCGGGCGcGGGCGCCGCCGGCgucggugcGGCUu -3' miRNA: 3'- gaAGCUCGU-CUUGCGGCGGCCG--------CCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 12504 | 0.81 | 0.054702 |
Target: 5'- -gUCGAGCGGcauGCGCagcaGCCGGCGGCc -3' miRNA: 3'- gaAGCUCGUCu--UGCGg---CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 55796 | 1.07 | 0.000531 |
Target: 5'- gCUUCGAGCAGAACGCCGCCGGCGGCUa -3' miRNA: 3'- -GAAGCUCGUCUUGCGGCGGCCGCCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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