miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 9744 0.7 0.284659
Target:  5'- --gCGAGCGGAuACGUCGaggagaaauUCGGCGGCa -3'
miRNA:   3'- gaaGCUCGUCU-UGCGGC---------GGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 30891 0.7 0.298716
Target:  5'- -gUCGcGCGugcGACGCCGCCGGCuuGGCc -3'
miRNA:   3'- gaAGCuCGUc--UUGCGGCGGCCG--CCGa -5'
24086 3' -60 NC_005262.1 + 43323 0.69 0.360267
Target:  5'- --cCGAGgAGGAaGCCGCUgaacaGGCGGCg -3'
miRNA:   3'- gaaGCUCgUCUUgCGGCGG-----CCGCCGa -5'
24086 3' -60 NC_005262.1 + 34483 0.69 0.328427
Target:  5'- gUUCGAGCAcau--CCGCgCGGCGGCg -3'
miRNA:   3'- gAAGCUCGUcuugcGGCG-GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 16049 0.69 0.320799
Target:  5'- --cCGGGUucgcCGCgGCCGGCGGCg -3'
miRNA:   3'- gaaGCUCGucuuGCGgCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 57224 0.69 0.328427
Target:  5'- -aUgGAGCcuGAucGCGCCGCucguCGGCGGCa -3'
miRNA:   3'- gaAgCUCGu-CU--UGCGGCG----GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 12263 0.69 0.360267
Target:  5'- -gUCGGGCAccugucGAuCGCgGCCGGCGaGCc -3'
miRNA:   3'- gaAGCUCGU------CUuGCGgCGGCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 60489 0.69 0.344082
Target:  5'- -aUCaGGGCGaGACGCCggGCCGcGCGGCg -3'
miRNA:   3'- gaAG-CUCGUcUUGCGG--CGGC-CGCCGa -5'
24086 3' -60 NC_005262.1 + 1328 0.69 0.320799
Target:  5'- aCUUCaGAGCgcGGAuacgauuCGCCGCCucGGUGGCg -3'
miRNA:   3'- -GAAG-CUCG--UCUu------GCGGCGG--CCGCCGa -5'
24086 3' -60 NC_005262.1 + 33619 0.69 0.344082
Target:  5'- --aCGucGCAGGAaaaGCCGCCGGCgcagguguccgaGGCUg -3'
miRNA:   3'- gaaGCu-CGUCUUg--CGGCGGCCG------------CCGA- -5'
24086 3' -60 NC_005262.1 + 56894 0.69 0.336188
Target:  5'- -gUCGAGCGcGAcaacACGCuCGCCGGCGa-- -3'
miRNA:   3'- gaAGCUCGU-CU----UGCG-GCGGCCGCcga -5'
24086 3' -60 NC_005262.1 + 61134 0.69 0.336188
Target:  5'- --gCGGcCAGGACGCCGCCcGGCGccGCg -3'
miRNA:   3'- gaaGCUcGUCUUGCGGCGG-CCGC--CGa -5'
24086 3' -60 NC_005262.1 + 4592 0.69 0.320799
Target:  5'- -cUCGGGCGuGAGCGcCCGCaggaacgGGCGGUg -3'
miRNA:   3'- gaAGCUCGU-CUUGC-GGCGg------CCGCCGa -5'
24086 3' -60 NC_005262.1 + 34562 0.68 0.393325
Target:  5'- --aCGAGCAGGucgagcaucgucaGCGCgaucuCCGGCGGCa -3'
miRNA:   3'- gaaGCUCGUCU-------------UGCGgc---GGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 31088 0.68 0.402998
Target:  5'- --cCGAGCucgauGAuguCGCCcaccuggagGCCGGCGGCc -3'
miRNA:   3'- gaaGCUCGu----CUu--GCGG---------CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 10890 0.68 0.411922
Target:  5'- -aUCGAGCGGAucACGCCcucGCUGGUGuaguGCg -3'
miRNA:   3'- gaAGCUCGUCU--UGCGG---CGGCCGC----CGa -5'
24086 3' -60 NC_005262.1 + 59286 0.68 0.376975
Target:  5'- -gUCGcGCGGAucaacgaggacAUGCCGgaCGGCGGCUc -3'
miRNA:   3'- gaAGCuCGUCU-----------UGCGGCg-GCCGCCGA- -5'
24086 3' -60 NC_005262.1 + 52595 0.68 0.367722
Target:  5'- -cUCGAucuuGCAGGugGCgCGCacgaucaCGGCGGCg -3'
miRNA:   3'- gaAGCU----CGUCUugCG-GCG-------GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 40099 0.68 0.384663
Target:  5'- -gUCGAccgugcgccgGUAGAcccacacGCGCCGCUcgGGCGGCa -3'
miRNA:   3'- gaAGCU----------CGUCU-------UGCGGCGG--CCGCCGa -5'
24086 3' -60 NC_005262.1 + 58180 0.68 0.385523
Target:  5'- -cUCGGGCgAGGucgcgaacaucgACGCCGCCG-CGGUg -3'
miRNA:   3'- gaAGCUCG-UCU------------UGCGGCGGCcGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.