Results 101 - 117 of 117 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24086 | 3' | -60 | NC_005262.1 | + | 1904 | 0.66 | 0.517415 |
Target: 5'- cCUUCGAGCGGGGCGgagggUGCgGGUugcguGGCUc -3' miRNA: 3'- -GAAGCUCGUCUUGCg----GCGgCCG-----CCGA- -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 49720 | 0.66 | 0.514383 |
Target: 5'- --cCGGGCGGcgaaccGGCgGCCgaagccgcaccgacGCCGGCGGCg -3' miRNA: 3'- gaaGCUCGUC------UUG-CGG--------------CGGCCGCCGa -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 33976 | 0.66 | 0.514383 |
Target: 5'- -gUCGAGCugcuGGACGUCGUgcguaacaugggcgCGGaCGGCg -3' miRNA: 3'- gaAGCUCGu---CUUGCGGCG--------------GCC-GCCGa -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 47717 | 0.66 | 0.511358 |
Target: 5'- --cCGGGCGGcggcucgccgccuguAucugguGCGCCGCCGGCcgcGGCg -3' miRNA: 3'- gaaGCUCGUC---------------U------UGCGGCGGCCG---CCGa -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 43567 | 0.66 | 0.497343 |
Target: 5'- -aUCG-GCAaauuGGGCGCUGCgauugaGGCGGCUu -3' miRNA: 3'- gaAGCuCGU----CUUGCGGCGg-----CCGCCGA- -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 13778 | 0.66 | 0.497343 |
Target: 5'- -cUCGGGCuucacuucGGugGgCGCCGGCgcGGCUu -3' miRNA: 3'- gaAGCUCGu-------CUugCgGCGGCCG--CCGA- -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 29653 | 0.66 | 0.487438 |
Target: 5'- --gCGAGCGGcAUGCCGCCcGCGcccGCg -3' miRNA: 3'- gaaGCUCGUCuUGCGGCGGcCGC---CGa -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 15060 | 0.66 | 0.496348 |
Target: 5'- gUUCGAGCAGGcaugguCGCUguacccgccucggGCCGGaGGCa -3' miRNA: 3'- gAAGCUCGUCUu-----GCGG-------------CGGCCgCCGa -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 2562 | 0.66 | 0.497343 |
Target: 5'- --aCGAuccGCgAGAACGUCucggagacgaGCCGGCGGCc -3' miRNA: 3'- gaaGCU---CG-UCUUGCGG----------CGGCCGCCGa -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 31918 | 0.66 | 0.507336 |
Target: 5'- -cUCGAcGCGccGGACGUCGCCaccugcuguacGGCGGUg -3' miRNA: 3'- gaAGCU-CGU--CUUGCGGCGG-----------CCGCCGa -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 9466 | 0.66 | 0.474704 |
Target: 5'- -aUCGAGguGccgagcgcgucgauGACGUC-CUGGCGGCUc -3' miRNA: 3'- gaAGCUCguC--------------UUGCGGcGGCCGCCGA- -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 16940 | 0.66 | 0.477628 |
Target: 5'- cCUUCuuGCGGAAgaaguccaGCaCGCCGGCGcGCUu -3' miRNA: 3'- -GAAGcuCGUCUUg-------CG-GCGGCCGC-CGA- -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 29035 | 0.66 | 0.477628 |
Target: 5'- --cCGAGCucGAGCGgCGCCGGCacgacGCg -3' miRNA: 3'- gaaGCUCGu-CUUGCgGCGGCCGc----CGa -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 45872 | 0.66 | 0.487438 |
Target: 5'- -cUCGccguuGGCGucGGCGCCGaUCGGCGGCUc -3' miRNA: 3'- gaAGC-----UCGUc-UUGCGGC-GGCCGCCGA- -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 58586 | 0.66 | 0.487438 |
Target: 5'- -aUCGuGCAGGauACGCCcucggucgcGCCGGCcGCg -3' miRNA: 3'- gaAGCuCGUCU--UGCGG---------CGGCCGcCGa -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 21349 | 0.66 | 0.497343 |
Target: 5'- --gCGAGCGGuagauGCGCUGCuucgugauguugCGGCcGGCUg -3' miRNA: 3'- gaaGCUCGUCu----UGCGGCG------------GCCG-CCGA- -5' |
|||||||
24086 | 3' | -60 | NC_005262.1 | + | 41211 | 0.66 | 0.507336 |
Target: 5'- gCUUCGAGCAccguAUGaCUGCCGGCacGCUc -3' miRNA: 3'- -GAAGCUCGUcu--UGC-GGCGGCCGc-CGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home