miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 55796 1.07 0.000531
Target:  5'- gCUUCGAGCAGAACGCCGCCGGCGGCUa -3'
miRNA:   3'- -GAAGCUCGUCUUGCGGCGGCCGCCGA- -5'
24086 3' -60 NC_005262.1 + 12504 0.81 0.054702
Target:  5'- -gUCGAGCGGcauGCGCagcaGCCGGCGGCc -3'
miRNA:   3'- gaAGCUCGUCu--UGCGg---CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 14044 0.8 0.057847
Target:  5'- -cUCGGGCGcGGGCGCCGCCGGCgucggugcGGCUu -3'
miRNA:   3'- gaAGCUCGU-CUUGCGGCGGCCG--------CCGA- -5'
24086 3' -60 NC_005262.1 + 52690 0.77 0.10026
Target:  5'- -cUCGAGCAGGAagGCCGCCGGCcgacgccggacgaGGCc -3'
miRNA:   3'- gaAGCUCGUCUUg-CGGCGGCCG-------------CCGa -5'
24086 3' -60 NC_005262.1 + 44958 0.74 0.150536
Target:  5'- ---gGAGCAGAugGCCGCCGa-GGCg -3'
miRNA:   3'- gaagCUCGUCUugCGGCGGCcgCCGa -5'
24086 3' -60 NC_005262.1 + 33164 0.74 0.162514
Target:  5'- --gCGGGCAccuugccGAGCGUCGgCGGCGGCUc -3'
miRNA:   3'- gaaGCUCGU-------CUUGCGGCgGCCGCCGA- -5'
24086 3' -60 NC_005262.1 + 12100 0.73 0.176259
Target:  5'- uUUCGGGCGcaaucAGCGCCGCCGuGCGcGCg -3'
miRNA:   3'- gAAGCUCGUc----UUGCGGCGGC-CGC-CGa -5'
24086 3' -60 NC_005262.1 + 46802 0.73 0.190536
Target:  5'- --aCGAGCGc-GCGCUcgGCCGGCGGCa -3'
miRNA:   3'- gaaGCUCGUcuUGCGG--CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 11076 0.73 0.195013
Target:  5'- aCUUCGucAGCAGcgcggccucguccGGCGUCgGCCGGCGGCc -3'
miRNA:   3'- -GAAGC--UCGUC-------------UUGCGG-CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 55411 0.73 0.195516
Target:  5'- -aUCGAGCAgcucGAGCGCCgGCUGGaGGCg -3'
miRNA:   3'- gaAGCUCGU----CUUGCGG-CGGCCgCCGa -5'
24086 3' -60 NC_005262.1 + 32675 0.73 0.195516
Target:  5'- gCUUCGAGUuc-GCGCUGCCGGCcgccGGCc -3'
miRNA:   3'- -GAAGCUCGucuUGCGGCGGCCG----CCGa -5'
24086 3' -60 NC_005262.1 + 12575 0.72 0.205819
Target:  5'- -gUCGAGCugcuGCuGCCGCCGGCgaGGCg -3'
miRNA:   3'- gaAGCUCGucu-UG-CGGCGGCCG--CCGa -5'
24086 3' -60 NC_005262.1 + 4813 0.72 0.210606
Target:  5'- --aCGGcGCGGGaggcgugAgGCCGCCGGCGGCc -3'
miRNA:   3'- gaaGCU-CGUCU-------UgCGGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 222 0.72 0.216588
Target:  5'- ---gGAGcCAGAcACGCuacCGCCGGCGGCg -3'
miRNA:   3'- gaagCUC-GUCU-UGCG---GCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 58659 0.72 0.216588
Target:  5'- --cCGAGCAGGaucaGCGCCGCCcgucgcgcauGGCaGGCa -3'
miRNA:   3'- gaaGCUCGUCU----UGCGGCGG----------CCG-CCGa -5'
24086 3' -60 NC_005262.1 + 33319 0.72 0.227261
Target:  5'- -gUCGAGuCGGAcgcaacuGCGUCGCUGcGCGGCa -3'
miRNA:   3'- gaAGCUC-GUCU-------UGCGGCGGC-CGCCGa -5'
24086 3' -60 NC_005262.1 + 10841 0.72 0.227835
Target:  5'- -cUCGAGCAccuUGCCGCCGGCGaaGCc -3'
miRNA:   3'- gaAGCUCGUcuuGCGGCGGCCGC--CGa -5'
24086 3' -60 NC_005262.1 + 57404 0.72 0.227835
Target:  5'- -aUCGAGCuGAcCGCCGagaaGGCGGCc -3'
miRNA:   3'- gaAGCUCGuCUuGCGGCgg--CCGCCGa -5'
24086 3' -60 NC_005262.1 + 34128 0.72 0.233642
Target:  5'- -gUUGGGCGGGcuGCGCgggCGCgGGCGGCa -3'
miRNA:   3'- gaAGCUCGUCU--UGCG---GCGgCCGCCGa -5'
24086 3' -60 NC_005262.1 + 48958 0.71 0.239573
Target:  5'- -gUCGccAGCAuGACGCCGCagaugcaGGCGGCg -3'
miRNA:   3'- gaAGC--UCGUcUUGCGGCGg------CCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.