miRNA display CGI


Results 21 - 40 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 59224 0.71 0.245629
Target:  5'- --cCGAGCA--GCGCCGCCGcUGGCg -3'
miRNA:   3'- gaaGCUCGUcuUGCGGCGGCcGCCGa -5'
24086 3' -60 NC_005262.1 + 52216 0.71 0.251812
Target:  5'- -cUCGAGCGcuGGcCGCCGCCGGCauaGCa -3'
miRNA:   3'- gaAGCUCGU--CUuGCGGCGGCCGc--CGa -5'
24086 3' -60 NC_005262.1 + 14246 0.71 0.251812
Target:  5'- --aCGAGCAGGACGCagcguCGCCGGagacggaagUGGCa -3'
miRNA:   3'- gaaGCUCGUCUUGCG-----GCGGCC---------GCCGa -5'
24086 3' -60 NC_005262.1 + 43610 0.71 0.251812
Target:  5'- -aUCGcGCAGGugACGCuCGCCGGCaccGGCg -3'
miRNA:   3'- gaAGCuCGUCU--UGCG-GCGGCCG---CCGa -5'
24086 3' -60 NC_005262.1 + 39401 0.71 0.251812
Target:  5'- cCUUC--GCGGAcgugcGCGCCGCCGGUuuGGCg -3'
miRNA:   3'- -GAAGcuCGUCU-----UGCGGCGGCCG--CCGa -5'
24086 3' -60 NC_005262.1 + 7972 0.71 0.258122
Target:  5'- aCUUCGcgaAGCGcucacGAccucguaGCCGCCGGCGGCg -3'
miRNA:   3'- -GAAGC---UCGU-----CUug-----CGGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 58956 0.71 0.258122
Target:  5'- --gCGcAGCAgucGAACcagccgGCCGCCGGCGGCc -3'
miRNA:   3'- gaaGC-UCGU---CUUG------CGGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 32903 0.71 0.262616
Target:  5'- -cUCGAGCGcGAGCggcgucaccauccgGCCGCCGGCGaCUc -3'
miRNA:   3'- gaAGCUCGU-CUUG--------------CGGCGGCCGCcGA- -5'
24086 3' -60 NC_005262.1 + 36212 0.71 0.269145
Target:  5'- -gUCGAGCGGAuuggcaggcuucucGCGCUGCgCGGCguccucgccggGGCUg -3'
miRNA:   3'- gaAGCUCGUCU--------------UGCGGCG-GCCG-----------CCGA- -5'
24086 3' -60 NC_005262.1 + 47666 0.71 0.27113
Target:  5'- -aUCGAGCAGGACaugaaGCUGaucuaCGGCGGUc -3'
miRNA:   3'- gaAGCUCGUCUUG-----CGGCg----GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 21544 0.71 0.27113
Target:  5'- -cUCGcgguccugaAGCAGAugcCGCCGCCuggaaacgagGGCGGCUa -3'
miRNA:   3'- gaAGC---------UCGUCUu--GCGGCGG----------CCGCCGA- -5'
24086 3' -60 NC_005262.1 + 44165 0.7 0.277829
Target:  5'- -aUCGGGCAgGAGCGCgG-CGGCGaGCUc -3'
miRNA:   3'- gaAGCUCGU-CUUGCGgCgGCCGC-CGA- -5'
24086 3' -60 NC_005262.1 + 19124 0.7 0.277829
Target:  5'- -aUCGGGCGcGGgcGCGUCGCCGGCGuCUu -3'
miRNA:   3'- gaAGCUCGU-CU--UGCGGCGGCCGCcGA- -5'
24086 3' -60 NC_005262.1 + 57072 0.7 0.277829
Target:  5'- --cCGAGCAGAuCGgCGagauCGGCGGCUu -3'
miRNA:   3'- gaaGCUCGUCUuGCgGCg---GCCGCCGA- -5'
24086 3' -60 NC_005262.1 + 29293 0.7 0.284659
Target:  5'- -gUCGucucGCAGAagucgcGCGCCGCCGcGCGGa- -3'
miRNA:   3'- gaAGCu---CGUCU------UGCGGCGGC-CGCCga -5'
24086 3' -60 NC_005262.1 + 9744 0.7 0.284659
Target:  5'- --gCGAGCGGAuACGUCGaggagaaauUCGGCGGCa -3'
miRNA:   3'- gaaGCUCGUCU-UGCGGC---------GGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 12803 0.7 0.291621
Target:  5'- -aUUGGGCGGcGCGCaGCCGGCGcGUg -3'
miRNA:   3'- gaAGCUCGUCuUGCGgCGGCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 48344 0.7 0.298716
Target:  5'- -cUCG-GCAcGAccgacccgGCGCUGCUGGCGGCc -3'
miRNA:   3'- gaAGCuCGU-CU--------UGCGGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 30891 0.7 0.298716
Target:  5'- -gUCGcGCGugcGACGCCGCCGGCuuGGCc -3'
miRNA:   3'- gaAGCuCGUc--UUGCGGCGGCCG--CCGa -5'
24086 3' -60 NC_005262.1 + 5188 0.7 0.305944
Target:  5'- --gCGGGCGcGGGCGCgGCCGGCG-Cg -3'
miRNA:   3'- gaaGCUCGU-CUUGCGgCGGCCGCcGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.