Results 41 - 60 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24086 | 3' | -60 | NC_005262.1 | + | 31031 | 0.7 | 0.313305 |
Target: 5'- gUUCGAGCGGAAguacCGCCuGCUGGU-GCUg -3' miRNA: 3'- gAAGCUCGUCUU----GCGG-CGGCCGcCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 7523 | 0.7 | 0.313305 |
Target: 5'- -aUCGGGCAGGuucgGCgGCgCGUCGGCGcGCUc -3' miRNA: 3'- gaAGCUCGUCU----UG-CG-GCGGCCGC-CGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 1328 | 0.69 | 0.320799 |
Target: 5'- aCUUCaGAGCgcGGAuacgauuCGCCGCCucGGUGGCg -3' miRNA: 3'- -GAAG-CUCG--UCUu------GCGGCGG--CCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 4592 | 0.69 | 0.320799 |
Target: 5'- -cUCGGGCGuGAGCGcCCGCaggaacgGGCGGUg -3' miRNA: 3'- gaAGCUCGU-CUUGC-GGCGg------CCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 16049 | 0.69 | 0.320799 |
Target: 5'- --cCGGGUucgcCGCgGCCGGCGGCg -3' miRNA: 3'- gaaGCUCGucuuGCGgCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 57224 | 0.69 | 0.328427 |
Target: 5'- -aUgGAGCcuGAucGCGCCGCucguCGGCGGCa -3' miRNA: 3'- gaAgCUCGu-CU--UGCGGCG----GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 34483 | 0.69 | 0.328427 |
Target: 5'- gUUCGAGCAcau--CCGCgCGGCGGCg -3' miRNA: 3'- gAAGCUCGUcuugcGGCG-GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 61134 | 0.69 | 0.336188 |
Target: 5'- --gCGGcCAGGACGCCGCCcGGCGccGCg -3' miRNA: 3'- gaaGCUcGUCUUGCGGCGG-CCGC--CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 56894 | 0.69 | 0.336188 |
Target: 5'- -gUCGAGCGcGAcaacACGCuCGCCGGCGa-- -3' miRNA: 3'- gaAGCUCGU-CU----UGCG-GCGGCCGCcga -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 33619 | 0.69 | 0.344082 |
Target: 5'- --aCGucGCAGGAaaaGCCGCCGGCgcagguguccgaGGCUg -3' miRNA: 3'- gaaGCu-CGUCUUg--CGGCGGCCG------------CCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 60489 | 0.69 | 0.344082 |
Target: 5'- -aUCaGGGCGaGACGCCggGCCGcGCGGCg -3' miRNA: 3'- gaAG-CUCGUcUUGCGG--CGGC-CGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 12263 | 0.69 | 0.360267 |
Target: 5'- -gUCGGGCAccugucGAuCGCgGCCGGCGaGCc -3' miRNA: 3'- gaAGCUCGU------CUuGCGgCGGCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 43323 | 0.69 | 0.360267 |
Target: 5'- --cCGAGgAGGAaGCCGCUgaacaGGCGGCg -3' miRNA: 3'- gaaGCUCgUCUUgCGGCGG-----CCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 52595 | 0.68 | 0.367722 |
Target: 5'- -cUCGAucuuGCAGGugGCgCGCacgaucaCGGCGGCg -3' miRNA: 3'- gaAGCU----CGUCUugCG-GCG-------GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 57789 | 0.68 | 0.368556 |
Target: 5'- --gCGAGCAGAGCGaCCGCaagGGaCGGg- -3' miRNA: 3'- gaaGCUCGUCUUGC-GGCGg--CC-GCCga -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 59286 | 0.68 | 0.376975 |
Target: 5'- -gUCGcGCGGAucaacgaggacAUGCCGgaCGGCGGCUc -3' miRNA: 3'- gaAGCuCGUCU-----------UGCGGCg-GCCGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 40099 | 0.68 | 0.384663 |
Target: 5'- -gUCGAccgugcgccgGUAGAcccacacGCGCCGCUcgGGCGGCa -3' miRNA: 3'- gaAGCU----------CGUCU-------UGCGGCGG--CCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 53829 | 0.68 | 0.384663 |
Target: 5'- -aUCGAGCuGAcgcaccgGCGCgGCgCGGaCGGCa -3' miRNA: 3'- gaAGCUCGuCU-------UGCGgCG-GCC-GCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58180 | 0.68 | 0.385523 |
Target: 5'- -cUCGGGCgAGGucgcgaacaucgACGCCGCCG-CGGUg -3' miRNA: 3'- gaAGCUCG-UCU------------UGCGGCGGCcGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 22676 | 0.68 | 0.388978 |
Target: 5'- --cCGAGCGcgccgugacgcgcacGAucucgACGUgGCCGGCGGCg -3' miRNA: 3'- gaaGCUCGU---------------CU-----UGCGgCGGCCGCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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