Results 61 - 80 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24086 | 3' | -60 | NC_005262.1 | + | 34562 | 0.68 | 0.393325 |
Target: 5'- --aCGAGCAGGucgagcaucgucaGCGCgaucuCCGGCGGCa -3' miRNA: 3'- gaaGCUCGUCU-------------UGCGgc---GGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 36992 | 0.68 | 0.394198 |
Target: 5'- --cCGAGCcccaAGAACGUCGgcgagacggacaUCGGCGGCg -3' miRNA: 3'- gaaGCUCG----UCUUGCGGC------------GGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 5062 | 0.68 | 0.394198 |
Target: 5'- --gCGGGCAG-GC-CCGCggCGGCGGCg -3' miRNA: 3'- gaaGCUCGUCuUGcGGCG--GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 41661 | 0.68 | 0.402998 |
Target: 5'- uUUCcGGCGGcgccgucauCGCCGCCGGCaccGGCa -3' miRNA: 3'- gAAGcUCGUCuu-------GCGGCGGCCG---CCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 31088 | 0.68 | 0.402998 |
Target: 5'- --cCGAGCucgauGAuguCGCCcaccuggagGCCGGCGGCc -3' miRNA: 3'- gaaGCUCGu----CUu--GCGG---------CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 32876 | 0.68 | 0.408338 |
Target: 5'- --cCGAGCuguucgccgcgucGAACGUCggccaaGCCGGCGGCg -3' miRNA: 3'- gaaGCUCGu------------CUUGCGG------CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 7630 | 0.68 | 0.411922 |
Target: 5'- --aCGuuGGCcGAAUGUcgaCGCCGGCGGCg -3' miRNA: 3'- gaaGC--UCGuCUUGCG---GCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 10890 | 0.68 | 0.411922 |
Target: 5'- -aUCGAGCGGAucACGCCcucGCUGGUGuaguGCg -3' miRNA: 3'- gaAGCUCGUCU--UGCGG---CGGCCGC----CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 10957 | 0.67 | 0.420967 |
Target: 5'- --gCGcAGCAGGcauucGCGCUGUCGGCGcGCc -3' miRNA: 3'- gaaGC-UCGUCU-----UGCGGCGGCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 59710 | 0.67 | 0.420967 |
Target: 5'- --gCGGGCGcuACGUCGCCGGCaaGGUg -3' miRNA: 3'- gaaGCUCGUcuUGCGGCGGCCG--CCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 40331 | 0.67 | 0.420967 |
Target: 5'- gCUUCGAGCAucG-GCUcacgGCCGGCGcGCUg -3' miRNA: 3'- -GAAGCUCGUcuUgCGG----CGGCCGC-CGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 49340 | 0.67 | 0.436614 |
Target: 5'- --aCGAGCAGGcgcGCGCCGCgcucgcugacgacuCGGCGacGCg -3' miRNA: 3'- gaaGCUCGUCU---UGCGGCG--------------GCCGC--CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 49822 | 0.67 | 0.438477 |
Target: 5'- -aUCG-GCcgcgcgauGGAGCGCgcgaauggcccggUGCCGGCGGCg -3' miRNA: 3'- gaAGCuCG--------UCUUGCG-------------GCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 46231 | 0.67 | 0.43941 |
Target: 5'- -cUCG-GCuucGcGCGCCGCCG-CGGCUg -3' miRNA: 3'- gaAGCuCGu--CuUGCGGCGGCcGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 63549 | 0.67 | 0.43941 |
Target: 5'- --aCGuccGCGcGAAaugucccgcCGCCGCCGGCGGUa -3' miRNA: 3'- gaaGCu--CGU-CUU---------GCGGCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 48190 | 0.67 | 0.43941 |
Target: 5'- uUUCGGcacGCGGGacaguaauaaggGCGCgGUCGGUGGCa -3' miRNA: 3'- gAAGCU---CGUCU------------UGCGgCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 4282 | 0.67 | 0.447859 |
Target: 5'- cCUUCGGGCcauacuCGCCGUCGcccuucaGCGGCa -3' miRNA: 3'- -GAAGCUCGucuu--GCGGCGGC-------CGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 40546 | 0.67 | 0.447859 |
Target: 5'- --gCGGGCGGcucuuacGCGCCGggcaacaCCGGCGGUg -3' miRNA: 3'- gaaGCUCGUCu------UGCGGC-------GGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 29202 | 0.67 | 0.448803 |
Target: 5'- -cUCGAucucGUGGAucacgGCGCCGCaCGGCGcGCa -3' miRNA: 3'- gaAGCU----CGUCU-----UGCGGCG-GCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 51198 | 0.67 | 0.448803 |
Target: 5'- ---aGGGCGcGcucauccgcGACGCCucGCCGGCGGCa -3' miRNA: 3'- gaagCUCGU-C---------UUGCGG--CGGCCGCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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