Results 81 - 100 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24086 | 3' | -60 | NC_005262.1 | + | 13150 | 0.67 | 0.448803 |
Target: 5'- -cUgGAGCcGGuUGCUGCuCGGCGGCg -3' miRNA: 3'- gaAgCUCGuCUuGCGGCG-GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 27649 | 0.67 | 0.458306 |
Target: 5'- -cUCGAGCuGGuCGaucgCGCUGGCGGUg -3' miRNA: 3'- gaAGCUCGuCUuGCg---GCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58693 | 0.67 | 0.458306 |
Target: 5'- --gCGAGC---GCGCaacaaGCUGGCGGCa -3' miRNA: 3'- gaaGCUCGucuUGCGg----CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58758 | 0.67 | 0.467916 |
Target: 5'- --cCGAuCAG-GCGCCgGCCGGCGaGCa -3' miRNA: 3'- gaaGCUcGUCuUGCGG-CGGCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 51500 | 0.67 | 0.467916 |
Target: 5'- -aUCGAGCGGAucgGCCGCaaCGGCGa-- -3' miRNA: 3'- gaAGCUCGUCUug-CGGCG--GCCGCcga -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 49961 | 0.67 | 0.467916 |
Target: 5'- gUUCGAGCcGAuCGCCGacgagaCaGCGGCg -3' miRNA: 3'- gAAGCUCGuCUuGCGGCg-----GcCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 9466 | 0.66 | 0.474704 |
Target: 5'- -aUCGAGguGccgagcgcgucgauGACGUC-CUGGCGGCUc -3' miRNA: 3'- gaAGCUCguC--------------UUGCGGcGGCCGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 56765 | 0.66 | 0.476652 |
Target: 5'- -gUCGGGCGacGAGCGCUacaugaaGCUGGcCGGCc -3' miRNA: 3'- gaAGCUCGU--CUUGCGG-------CGGCC-GCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 16940 | 0.66 | 0.477628 |
Target: 5'- cCUUCuuGCGGAAgaaguccaGCaCGCCGGCGcGCUu -3' miRNA: 3'- -GAAGcuCGUCUUg-------CG-GCGGCCGC-CGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 29035 | 0.66 | 0.477628 |
Target: 5'- --cCGAGCucGAGCGgCGCCGGCacgacGCg -3' miRNA: 3'- gaaGCUCGu-CUUGCgGCGGCCGc----CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 43466 | 0.66 | 0.477628 |
Target: 5'- -aUCGAGUcGA--GCCGCUucguGGCGGCg -3' miRNA: 3'- gaAGCUCGuCUugCGGCGG----CCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 45518 | 0.66 | 0.477628 |
Target: 5'- -aUCGAGCGccacGAGCGCauuGCacugcaauuuucCGGCGGCa -3' miRNA: 3'- gaAGCUCGU----CUUGCGg--CG------------GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 29653 | 0.66 | 0.487438 |
Target: 5'- --gCGAGCGGcAUGCCGCCcGCGcccGCg -3' miRNA: 3'- gaaGCUCGUCuUGCGGCGGcCGC---CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 18294 | 0.66 | 0.487438 |
Target: 5'- uUUCGGGUAGGcGCGCCGguUCGcuucGCGGCg -3' miRNA: 3'- gAAGCUCGUCU-UGCGGC--GGC----CGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 6553 | 0.66 | 0.487438 |
Target: 5'- gCUUCG-GCGuguUGCCGCCGacgaGCGGCg -3' miRNA: 3'- -GAAGCuCGUcuuGCGGCGGC----CGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 45872 | 0.66 | 0.487438 |
Target: 5'- -cUCGccguuGGCGucGGCGCCGaUCGGCGGCUc -3' miRNA: 3'- gaAGC-----UCGUc-UUGCGGC-GGCCGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58586 | 0.66 | 0.487438 |
Target: 5'- -aUCGuGCAGGauACGCCcucggucgcGCCGGCcGCg -3' miRNA: 3'- gaAGCuCGUCU--UGCGG---------CGGCCGcCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 15060 | 0.66 | 0.496348 |
Target: 5'- gUUCGAGCAGGcaugguCGCUguacccgccucggGCCGGaGGCa -3' miRNA: 3'- gAAGCUCGUCUu-----GCGG-------------CGGCCgCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 21349 | 0.66 | 0.497343 |
Target: 5'- --gCGAGCGGuagauGCGCUGCuucgugauguugCGGCcGGCUg -3' miRNA: 3'- gaaGCUCGUCu----UGCGGCG------------GCCG-CCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 2562 | 0.66 | 0.497343 |
Target: 5'- --aCGAuccGCgAGAACGUCucggagacgaGCCGGCGGCc -3' miRNA: 3'- gaaGCU---CG-UCUUGCGG----------CGGCCGCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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