miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 4282 0.67 0.447859
Target:  5'- cCUUCGGGCcauacuCGCCGUCGcccuucaGCGGCa -3'
miRNA:   3'- -GAAGCUCGucuu--GCGGCGGC-------CGCCGa -5'
24086 3' -60 NC_005262.1 + 46231 0.67 0.43941
Target:  5'- -cUCG-GCuucGcGCGCCGCCG-CGGCUg -3'
miRNA:   3'- gaAGCuCGu--CuUGCGGCGGCcGCCGA- -5'
24086 3' -60 NC_005262.1 + 63549 0.67 0.43941
Target:  5'- --aCGuccGCGcGAAaugucccgcCGCCGCCGGCGGUa -3'
miRNA:   3'- gaaGCu--CGU-CUU---------GCGGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 48190 0.67 0.43941
Target:  5'- uUUCGGcacGCGGGacaguaauaaggGCGCgGUCGGUGGCa -3'
miRNA:   3'- gAAGCU---CGUCU------------UGCGgCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 49822 0.67 0.438477
Target:  5'- -aUCG-GCcgcgcgauGGAGCGCgcgaauggcccggUGCCGGCGGCg -3'
miRNA:   3'- gaAGCuCG--------UCUUGCG-------------GCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 49340 0.67 0.436614
Target:  5'- --aCGAGCAGGcgcGCGCCGCgcucgcugacgacuCGGCGacGCg -3'
miRNA:   3'- gaaGCUCGUCU---UGCGGCG--------------GCCGC--CGa -5'
24086 3' -60 NC_005262.1 + 40331 0.67 0.420967
Target:  5'- gCUUCGAGCAucG-GCUcacgGCCGGCGcGCUg -3'
miRNA:   3'- -GAAGCUCGUcuUgCGG----CGGCCGC-CGA- -5'
24086 3' -60 NC_005262.1 + 10957 0.67 0.420967
Target:  5'- --gCGcAGCAGGcauucGCGCUGUCGGCGcGCc -3'
miRNA:   3'- gaaGC-UCGUCU-----UGCGGCGGCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 59710 0.67 0.420967
Target:  5'- --gCGGGCGcuACGUCGCCGGCaaGGUg -3'
miRNA:   3'- gaaGCUCGUcuUGCGGCGGCCG--CCGa -5'
24086 3' -60 NC_005262.1 + 10890 0.68 0.411922
Target:  5'- -aUCGAGCGGAucACGCCcucGCUGGUGuaguGCg -3'
miRNA:   3'- gaAGCUCGUCU--UGCGG---CGGCCGC----CGa -5'
24086 3' -60 NC_005262.1 + 7630 0.68 0.411922
Target:  5'- --aCGuuGGCcGAAUGUcgaCGCCGGCGGCg -3'
miRNA:   3'- gaaGC--UCGuCUUGCG---GCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 32876 0.68 0.408338
Target:  5'- --cCGAGCuguucgccgcgucGAACGUCggccaaGCCGGCGGCg -3'
miRNA:   3'- gaaGCUCGu------------CUUGCGG------CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 31088 0.68 0.402998
Target:  5'- --cCGAGCucgauGAuguCGCCcaccuggagGCCGGCGGCc -3'
miRNA:   3'- gaaGCUCGu----CUu--GCGG---------CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 41661 0.68 0.402998
Target:  5'- uUUCcGGCGGcgccgucauCGCCGCCGGCaccGGCa -3'
miRNA:   3'- gAAGcUCGUCuu-------GCGGCGGCCG---CCGa -5'
24086 3' -60 NC_005262.1 + 36992 0.68 0.394198
Target:  5'- --cCGAGCcccaAGAACGUCGgcgagacggacaUCGGCGGCg -3'
miRNA:   3'- gaaGCUCG----UCUUGCGGC------------GGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 5062 0.68 0.394198
Target:  5'- --gCGGGCAG-GC-CCGCggCGGCGGCg -3'
miRNA:   3'- gaaGCUCGUCuUGcGGCG--GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 34562 0.68 0.393325
Target:  5'- --aCGAGCAGGucgagcaucgucaGCGCgaucuCCGGCGGCa -3'
miRNA:   3'- gaaGCUCGUCU-------------UGCGgc---GGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 22676 0.68 0.388978
Target:  5'- --cCGAGCGcgccgugacgcgcacGAucucgACGUgGCCGGCGGCg -3'
miRNA:   3'- gaaGCUCGU---------------CU-----UGCGgCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 58180 0.68 0.385523
Target:  5'- -cUCGGGCgAGGucgcgaacaucgACGCCGCCG-CGGUg -3'
miRNA:   3'- gaAGCUCG-UCU------------UGCGGCGGCcGCCGa -5'
24086 3' -60 NC_005262.1 + 53829 0.68 0.384663
Target:  5'- -aUCGAGCuGAcgcaccgGCGCgGCgCGGaCGGCa -3'
miRNA:   3'- gaAGCUCGuCU-------UGCGgCG-GCC-GCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.