miRNA display CGI


Results 1 - 20 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 222 0.72 0.216588
Target:  5'- ---gGAGcCAGAcACGCuacCGCCGGCGGCg -3'
miRNA:   3'- gaagCUC-GUCU-UGCG---GCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 1328 0.69 0.320799
Target:  5'- aCUUCaGAGCgcGGAuacgauuCGCCGCCucGGUGGCg -3'
miRNA:   3'- -GAAG-CUCG--UCUu------GCGGCGG--CCGCCGa -5'
24086 3' -60 NC_005262.1 + 1904 0.66 0.517415
Target:  5'- cCUUCGAGCGGGGCGgagggUGCgGGUugcguGGCUc -3'
miRNA:   3'- -GAAGCUCGUCUUGCg----GCGgCCG-----CCGA- -5'
24086 3' -60 NC_005262.1 + 2562 0.66 0.497343
Target:  5'- --aCGAuccGCgAGAACGUCucggagacgaGCCGGCGGCc -3'
miRNA:   3'- gaaGCU---CG-UCUUGCGG----------CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 3578 0.66 0.527572
Target:  5'- cCUUC-AGCAGcuUGCCgaccucGCCGGcCGGCUc -3'
miRNA:   3'- -GAAGcUCGUCuuGCGG------CGGCC-GCCGA- -5'
24086 3' -60 NC_005262.1 + 4282 0.67 0.447859
Target:  5'- cCUUCGGGCcauacuCGCCGUCGcccuucaGCGGCa -3'
miRNA:   3'- -GAAGCUCGucuu--GCGGCGGC-------CGCCGa -5'
24086 3' -60 NC_005262.1 + 4592 0.69 0.320799
Target:  5'- -cUCGGGCGuGAGCGcCCGCaggaacgGGCGGUg -3'
miRNA:   3'- gaAGCUCGU-CUUGC-GGCGg------CCGCCGa -5'
24086 3' -60 NC_005262.1 + 4813 0.72 0.210606
Target:  5'- --aCGGcGCGGGaggcgugAgGCCGCCGGCGGCc -3'
miRNA:   3'- gaaGCU-CGUCU-------UgCGGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 5062 0.68 0.394198
Target:  5'- --gCGGGCAG-GC-CCGCggCGGCGGCg -3'
miRNA:   3'- gaaGCUCGUCuUGcGGCG--GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 5188 0.7 0.305944
Target:  5'- --gCGGGCGcGGGCGCgGCCGGCG-Cg -3'
miRNA:   3'- gaaGCUCGU-CUUGCGgCGGCCGCcGa -5'
24086 3' -60 NC_005262.1 + 6553 0.66 0.487438
Target:  5'- gCUUCG-GCGuguUGCCGCCGacgaGCGGCg -3'
miRNA:   3'- -GAAGCuCGUcuuGCGGCGGC----CGCCGa -5'
24086 3' -60 NC_005262.1 + 7523 0.7 0.313305
Target:  5'- -aUCGGGCAGGuucgGCgGCgCGUCGGCGcGCUc -3'
miRNA:   3'- gaAGCUCGUCU----UG-CG-GCGGCCGC-CGA- -5'
24086 3' -60 NC_005262.1 + 7630 0.68 0.411922
Target:  5'- --aCGuuGGCcGAAUGUcgaCGCCGGCGGCg -3'
miRNA:   3'- gaaGC--UCGuCUUGCG---GCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 7972 0.71 0.258122
Target:  5'- aCUUCGcgaAGCGcucacGAccucguaGCCGCCGGCGGCg -3'
miRNA:   3'- -GAAGC---UCGU-----CUug-----CGGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 9466 0.66 0.474704
Target:  5'- -aUCGAGguGccgagcgcgucgauGACGUC-CUGGCGGCUc -3'
miRNA:   3'- gaAGCUCguC--------------UUGCGGcGGCCGCCGA- -5'
24086 3' -60 NC_005262.1 + 9744 0.7 0.284659
Target:  5'- --gCGAGCGGAuACGUCGaggagaaauUCGGCGGCa -3'
miRNA:   3'- gaaGCUCGUCU-UGCGGC---------GGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 9942 0.66 0.524517
Target:  5'- -cUUGAGCGcGAucugcuugccguccGCGCCgcGCCGGUGGUc -3'
miRNA:   3'- gaAGCUCGU-CU--------------UGCGG--CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 10487 0.66 0.507336
Target:  5'- --gCGAccaGCAGcAGCGCCaGCaUGGCGGCc -3'
miRNA:   3'- gaaGCU---CGUC-UUGCGG-CG-GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 10841 0.72 0.227835
Target:  5'- -cUCGAGCAccuUGCCGCCGGCGaaGCc -3'
miRNA:   3'- gaAGCUCGUcuuGCGGCGGCCGC--CGa -5'
24086 3' -60 NC_005262.1 + 10890 0.68 0.411922
Target:  5'- -aUCGAGCGGAucACGCCcucGCUGGUGuaguGCg -3'
miRNA:   3'- gaAGCUCGUCU--UGCGG---CGGCCGC----CGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.