miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 10957 0.67 0.420967
Target:  5'- --gCGcAGCAGGcauucGCGCUGUCGGCGcGCc -3'
miRNA:   3'- gaaGC-UCGUCU-----UGCGGCGGCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 11076 0.73 0.195013
Target:  5'- aCUUCGucAGCAGcgcggccucguccGGCGUCgGCCGGCGGCc -3'
miRNA:   3'- -GAAGC--UCGUC-------------UUGCGG-CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 12100 0.73 0.176259
Target:  5'- uUUCGGGCGcaaucAGCGCCGCCGuGCGcGCg -3'
miRNA:   3'- gAAGCUCGUc----UUGCGGCGGC-CGC-CGa -5'
24086 3' -60 NC_005262.1 + 12263 0.69 0.360267
Target:  5'- -gUCGGGCAccugucGAuCGCgGCCGGCGaGCc -3'
miRNA:   3'- gaAGCUCGU------CUuGCGgCGGCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 12461 0.66 0.497343
Target:  5'- -gUCGAGacgucgcucaCGGGGCGCCGC--GCGGCa -3'
miRNA:   3'- gaAGCUC----------GUCUUGCGGCGgcCGCCGa -5'
24086 3' -60 NC_005262.1 + 12504 0.81 0.054702
Target:  5'- -gUCGAGCGGcauGCGCagcaGCCGGCGGCc -3'
miRNA:   3'- gaAGCUCGUCu--UGCGg---CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 12575 0.72 0.205819
Target:  5'- -gUCGAGCugcuGCuGCCGCCGGCgaGGCg -3'
miRNA:   3'- gaAGCUCGucu-UG-CGGCGGCCG--CCGa -5'
24086 3' -60 NC_005262.1 + 12803 0.7 0.291621
Target:  5'- -aUUGGGCGGcGCGCaGCCGGCGcGUg -3'
miRNA:   3'- gaAGCUCGUCuUGCGgCGGCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 13150 0.67 0.448803
Target:  5'- -cUgGAGCcGGuUGCUGCuCGGCGGCg -3'
miRNA:   3'- gaAgCUCGuCUuGCGGCG-GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 13778 0.66 0.497343
Target:  5'- -cUCGGGCuucacuucGGugGgCGCCGGCgcGGCUu -3'
miRNA:   3'- gaAGCUCGu-------CUugCgGCGGCCG--CCGA- -5'
24086 3' -60 NC_005262.1 + 14044 0.8 0.057847
Target:  5'- -cUCGGGCGcGGGCGCCGCCGGCgucggugcGGCUu -3'
miRNA:   3'- gaAGCUCGU-CUUGCGGCGGCCG--------CCGA- -5'
24086 3' -60 NC_005262.1 + 14246 0.71 0.251812
Target:  5'- --aCGAGCAGGACGCagcguCGCCGGagacggaagUGGCa -3'
miRNA:   3'- gaaGCUCGUCUUGCG-----GCGGCC---------GCCGa -5'
24086 3' -60 NC_005262.1 + 15060 0.66 0.496348
Target:  5'- gUUCGAGCAGGcaugguCGCUguacccgccucggGCCGGaGGCa -3'
miRNA:   3'- gAAGCUCGUCUu-----GCGG-------------CGGCCgCCGa -5'
24086 3' -60 NC_005262.1 + 16049 0.69 0.320799
Target:  5'- --cCGGGUucgcCGCgGCCGGCGGCg -3'
miRNA:   3'- gaaGCUCGucuuGCGgCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 16940 0.66 0.477628
Target:  5'- cCUUCuuGCGGAAgaaguccaGCaCGCCGGCGcGCUu -3'
miRNA:   3'- -GAAGcuCGUCUUg-------CG-GCGGCCGC-CGA- -5'
24086 3' -60 NC_005262.1 + 18294 0.66 0.487438
Target:  5'- uUUCGGGUAGGcGCGCCGguUCGcuucGCGGCg -3'
miRNA:   3'- gAAGCUCGUCU-UGCGGC--GGC----CGCCGa -5'
24086 3' -60 NC_005262.1 + 19124 0.7 0.277829
Target:  5'- -aUCGGGCGcGGgcGCGUCGCCGGCGuCUu -3'
miRNA:   3'- gaAGCUCGU-CU--UGCGGCGGCCGCcGA- -5'
24086 3' -60 NC_005262.1 + 21349 0.66 0.497343
Target:  5'- --gCGAGCGGuagauGCGCUGCuucgugauguugCGGCcGGCUg -3'
miRNA:   3'- gaaGCUCGUCu----UGCGGCG------------GCCG-CCGA- -5'
24086 3' -60 NC_005262.1 + 21544 0.71 0.27113
Target:  5'- -cUCGcgguccugaAGCAGAugcCGCCGCCuggaaacgagGGCGGCUa -3'
miRNA:   3'- gaAGC---------UCGUCUu--GCGGCGG----------CCGCCGA- -5'
24086 3' -60 NC_005262.1 + 22676 0.68 0.388978
Target:  5'- --cCGAGCGcgccgugacgcgcacGAucucgACGUgGCCGGCGGCg -3'
miRNA:   3'- gaaGCUCGU---------------CU-----UGCGgCGGCCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.