miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 26577 0.66 0.527572
Target:  5'- gUUCGcGCAGGcauaCGCUGGCGGCc -3'
miRNA:   3'- gAAGCuCGUCUugcgGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 27649 0.67 0.458306
Target:  5'- -cUCGAGCuGGuCGaucgCGCUGGCGGUg -3'
miRNA:   3'- gaAGCUCGuCUuGCg---GCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 29035 0.66 0.477628
Target:  5'- --cCGAGCucGAGCGgCGCCGGCacgacGCg -3'
miRNA:   3'- gaaGCUCGu-CUUGCgGCGGCCGc----CGa -5'
24086 3' -60 NC_005262.1 + 29202 0.67 0.448803
Target:  5'- -cUCGAucucGUGGAucacgGCGCCGCaCGGCGcGCa -3'
miRNA:   3'- gaAGCU----CGUCU-----UGCGGCG-GCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 29293 0.7 0.284659
Target:  5'- -gUCGucucGCAGAagucgcGCGCCGCCGcGCGGa- -3'
miRNA:   3'- gaAGCu---CGUCU------UGCGGCGGC-CGCCga -5'
24086 3' -60 NC_005262.1 + 29578 0.66 0.506333
Target:  5'- -gUCGAGCGuguCGCCcgaagccgcgaucGCgGGCGGCa -3'
miRNA:   3'- gaAGCUCGUcuuGCGG-------------CGgCCGCCGa -5'
24086 3' -60 NC_005262.1 + 29653 0.66 0.487438
Target:  5'- --gCGAGCGGcAUGCCGCCcGCGcccGCg -3'
miRNA:   3'- gaaGCUCGUCuUGCGGCGGcCGC---CGa -5'
24086 3' -60 NC_005262.1 + 30891 0.7 0.298716
Target:  5'- -gUCGcGCGugcGACGCCGCCGGCuuGGCc -3'
miRNA:   3'- gaAGCuCGUc--UUGCGGCGGCCG--CCGa -5'
24086 3' -60 NC_005262.1 + 31031 0.7 0.313305
Target:  5'- gUUCGAGCGGAAguacCGCCuGCUGGU-GCUg -3'
miRNA:   3'- gAAGCUCGUCUU----GCGG-CGGCCGcCGA- -5'
24086 3' -60 NC_005262.1 + 31088 0.68 0.402998
Target:  5'- --cCGAGCucgauGAuguCGCCcaccuggagGCCGGCGGCc -3'
miRNA:   3'- gaaGCUCGu----CUu--GCGG---------CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 31918 0.66 0.507336
Target:  5'- -cUCGAcGCGccGGACGUCGCCaccugcuguacGGCGGUg -3'
miRNA:   3'- gaAGCU-CGU--CUUGCGGCGG-----------CCGCCGa -5'
24086 3' -60 NC_005262.1 + 32675 0.73 0.195516
Target:  5'- gCUUCGAGUuc-GCGCUGCCGGCcgccGGCc -3'
miRNA:   3'- -GAAGCUCGucuUGCGGCGGCCG----CCGa -5'
24086 3' -60 NC_005262.1 + 32876 0.68 0.408338
Target:  5'- --cCGAGCuguucgccgcgucGAACGUCggccaaGCCGGCGGCg -3'
miRNA:   3'- gaaGCUCGu------------CUUGCGG------CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 32903 0.71 0.262616
Target:  5'- -cUCGAGCGcGAGCggcgucaccauccgGCCGCCGGCGaCUc -3'
miRNA:   3'- gaAGCUCGU-CUUG--------------CGGCGGCCGCcGA- -5'
24086 3' -60 NC_005262.1 + 33164 0.74 0.162514
Target:  5'- --gCGGGCAccuugccGAGCGUCGgCGGCGGCUc -3'
miRNA:   3'- gaaGCUCGU-------CUUGCGGCgGCCGCCGA- -5'
24086 3' -60 NC_005262.1 + 33319 0.72 0.227261
Target:  5'- -gUCGAGuCGGAcgcaacuGCGUCGCUGcGCGGCa -3'
miRNA:   3'- gaAGCUC-GUCU-------UGCGGCGGC-CGCCGa -5'
24086 3' -60 NC_005262.1 + 33619 0.69 0.344082
Target:  5'- --aCGucGCAGGAaaaGCCGCCGGCgcagguguccgaGGCUg -3'
miRNA:   3'- gaaGCu-CGUCUUg--CGGCGGCCG------------CCGA- -5'
24086 3' -60 NC_005262.1 + 33976 0.66 0.514383
Target:  5'- -gUCGAGCugcuGGACGUCGUgcguaacaugggcgCGGaCGGCg -3'
miRNA:   3'- gaAGCUCGu---CUUGCGGCG--------------GCC-GCCGa -5'
24086 3' -60 NC_005262.1 + 34128 0.72 0.233642
Target:  5'- -gUUGGGCGGGcuGCGCgggCGCgGGCGGCa -3'
miRNA:   3'- gaAGCUCGUCU--UGCG---GCGgCCGCCGa -5'
24086 3' -60 NC_005262.1 + 34483 0.69 0.328427
Target:  5'- gUUCGAGCAcau--CCGCgCGGCGGCg -3'
miRNA:   3'- gAAGCUCGUcuugcGGCG-GCCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.