miRNA display CGI


Results 61 - 80 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 34562 0.68 0.393325
Target:  5'- --aCGAGCAGGucgagcaucgucaGCGCgaucuCCGGCGGCa -3'
miRNA:   3'- gaaGCUCGUCU-------------UGCGgc---GGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 36212 0.71 0.269145
Target:  5'- -gUCGAGCGGAuuggcaggcuucucGCGCUGCgCGGCguccucgccggGGCUg -3'
miRNA:   3'- gaAGCUCGUCU--------------UGCGGCG-GCCG-----------CCGA- -5'
24086 3' -60 NC_005262.1 + 36992 0.68 0.394198
Target:  5'- --cCGAGCcccaAGAACGUCGgcgagacggacaUCGGCGGCg -3'
miRNA:   3'- gaaGCUCG----UCUUGCGGC------------GGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 39401 0.71 0.251812
Target:  5'- cCUUC--GCGGAcgugcGCGCCGCCGGUuuGGCg -3'
miRNA:   3'- -GAAGcuCGUCU-----UGCGGCGGCCG--CCGa -5'
24086 3' -60 NC_005262.1 + 40099 0.68 0.384663
Target:  5'- -gUCGAccgugcgccgGUAGAcccacacGCGCCGCUcgGGCGGCa -3'
miRNA:   3'- gaAGCU----------CGUCU-------UGCGGCGG--CCGCCGa -5'
24086 3' -60 NC_005262.1 + 40331 0.67 0.420967
Target:  5'- gCUUCGAGCAucG-GCUcacgGCCGGCGcGCUg -3'
miRNA:   3'- -GAAGCUCGUcuUgCGG----CGGCCGC-CGA- -5'
24086 3' -60 NC_005262.1 + 40546 0.67 0.447859
Target:  5'- --gCGGGCGGcucuuacGCGCCGggcaacaCCGGCGGUg -3'
miRNA:   3'- gaaGCUCGUCu------UGCGGC-------GGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 41211 0.66 0.507336
Target:  5'- gCUUCGAGCAccguAUGaCUGCCGGCacGCUc -3'
miRNA:   3'- -GAAGCUCGUcu--UGC-GGCGGCCGc-CGA- -5'
24086 3' -60 NC_005262.1 + 41661 0.68 0.402998
Target:  5'- uUUCcGGCGGcgccgucauCGCCGCCGGCaccGGCa -3'
miRNA:   3'- gAAGcUCGUCuu-------GCGGCGGCCG---CCGa -5'
24086 3' -60 NC_005262.1 + 43271 0.66 0.50133
Target:  5'- cCUUCGAGUGGGgugaggucgucgcgaGCGCCGCgccgaUGGUGcGCg -3'
miRNA:   3'- -GAAGCUCGUCU---------------UGCGGCG-----GCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 43323 0.69 0.360267
Target:  5'- --cCGAGgAGGAaGCCGCUgaacaGGCGGCg -3'
miRNA:   3'- gaaGCUCgUCUUgCGGCGG-----CCGCCGa -5'
24086 3' -60 NC_005262.1 + 43466 0.66 0.477628
Target:  5'- -aUCGAGUcGA--GCCGCUucguGGCGGCg -3'
miRNA:   3'- gaAGCUCGuCUugCGGCGG----CCGCCGa -5'
24086 3' -60 NC_005262.1 + 43567 0.66 0.497343
Target:  5'- -aUCG-GCAaauuGGGCGCUGCgauugaGGCGGCUu -3'
miRNA:   3'- gaAGCuCGU----CUUGCGGCGg-----CCGCCGA- -5'
24086 3' -60 NC_005262.1 + 43610 0.71 0.251812
Target:  5'- -aUCGcGCAGGugACGCuCGCCGGCaccGGCg -3'
miRNA:   3'- gaAGCuCGUCU--UGCG-GCGGCCG---CCGa -5'
24086 3' -60 NC_005262.1 + 44165 0.7 0.277829
Target:  5'- -aUCGGGCAgGAGCGCgG-CGGCGaGCUc -3'
miRNA:   3'- gaAGCUCGU-CUUGCGgCgGCCGC-CGA- -5'
24086 3' -60 NC_005262.1 + 44958 0.74 0.150536
Target:  5'- ---gGAGCAGAugGCCGCCGa-GGCg -3'
miRNA:   3'- gaagCUCGUCUugCGGCGGCcgCCGa -5'
24086 3' -60 NC_005262.1 + 45518 0.66 0.477628
Target:  5'- -aUCGAGCGccacGAGCGCauuGCacugcaauuuucCGGCGGCa -3'
miRNA:   3'- gaAGCUCGU----CUUGCGg--CG------------GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 45872 0.66 0.487438
Target:  5'- -cUCGccguuGGCGucGGCGCCGaUCGGCGGCUc -3'
miRNA:   3'- gaAGC-----UCGUc-UUGCGGC-GGCCGCCGA- -5'
24086 3' -60 NC_005262.1 + 46231 0.67 0.43941
Target:  5'- -cUCG-GCuucGcGCGCCGCCG-CGGCUg -3'
miRNA:   3'- gaAGCuCGu--CuUGCGGCGGCcGCCGA- -5'
24086 3' -60 NC_005262.1 + 46802 0.73 0.190536
Target:  5'- --aCGAGCGc-GCGCUcgGCCGGCGGCa -3'
miRNA:   3'- gaaGCUCGUcuUGCGG--CGGCCGCCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.