Results 101 - 117 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24086 | 3' | -60 | NC_005262.1 | + | 57072 | 0.7 | 0.277829 |
Target: 5'- --cCGAGCAGAuCGgCGagauCGGCGGCUu -3' miRNA: 3'- gaaGCUCGUCUuGCgGCg---GCCGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 57224 | 0.69 | 0.328427 |
Target: 5'- -aUgGAGCcuGAucGCGCCGCucguCGGCGGCa -3' miRNA: 3'- gaAgCUCGu-CU--UGCGGCG----GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 57404 | 0.72 | 0.227835 |
Target: 5'- -aUCGAGCuGAcCGCCGagaaGGCGGCc -3' miRNA: 3'- gaAGCUCGuCUuGCGGCgg--CCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 57789 | 0.68 | 0.368556 |
Target: 5'- --gCGAGCAGAGCGaCCGCaagGGaCGGg- -3' miRNA: 3'- gaaGCUCGUCUUGC-GGCGg--CC-GCCga -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58180 | 0.68 | 0.385523 |
Target: 5'- -cUCGGGCgAGGucgcgaacaucgACGCCGCCG-CGGUg -3' miRNA: 3'- gaAGCUCG-UCU------------UGCGGCGGCcGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58586 | 0.66 | 0.487438 |
Target: 5'- -aUCGuGCAGGauACGCCcucggucgcGCCGGCcGCg -3' miRNA: 3'- gaAGCuCGUCU--UGCGG---------CGGCCGcCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58659 | 0.72 | 0.216588 |
Target: 5'- --cCGAGCAGGaucaGCGCCGCCcgucgcgcauGGCaGGCa -3' miRNA: 3'- gaaGCUCGUCU----UGCGGCGG----------CCG-CCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58693 | 0.67 | 0.458306 |
Target: 5'- --gCGAGC---GCGCaacaaGCUGGCGGCa -3' miRNA: 3'- gaaGCUCGucuUGCGg----CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58758 | 0.67 | 0.467916 |
Target: 5'- --cCGAuCAG-GCGCCgGCCGGCGaGCa -3' miRNA: 3'- gaaGCUcGUCuUGCGG-CGGCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58956 | 0.71 | 0.258122 |
Target: 5'- --gCGcAGCAgucGAACcagccgGCCGCCGGCGGCc -3' miRNA: 3'- gaaGC-UCGU---CUUG------CGGCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 59224 | 0.71 | 0.245629 |
Target: 5'- --cCGAGCA--GCGCCGCCGcUGGCg -3' miRNA: 3'- gaaGCUCGUcuUGCGGCGGCcGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 59286 | 0.68 | 0.376975 |
Target: 5'- -gUCGcGCGGAucaacgaggacAUGCCGgaCGGCGGCUc -3' miRNA: 3'- gaAGCuCGUCU-----------UGCGGCg-GCCGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 59710 | 0.67 | 0.420967 |
Target: 5'- --gCGGGCGcuACGUCGCCGGCaaGGUg -3' miRNA: 3'- gaaGCUCGUcuUGCGGCGGCCG--CCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 60116 | 0.66 | 0.527572 |
Target: 5'- -gUCGGGCacgAGGGCGCCaGCgucGCGGCg -3' miRNA: 3'- gaAGCUCG---UCUUGCGG-CGgc-CGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 60489 | 0.69 | 0.344082 |
Target: 5'- -aUCaGGGCGaGACGCCggGCCGcGCGGCg -3' miRNA: 3'- gaAG-CUCGUcUUGCGG--CGGC-CGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 61134 | 0.69 | 0.336188 |
Target: 5'- --gCGGcCAGGACGCCGCCcGGCGccGCg -3' miRNA: 3'- gaaGCUcGUCUUGCGGCGG-CCGC--CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 63549 | 0.67 | 0.43941 |
Target: 5'- --aCGuccGCGcGAAaugucccgcCGCCGCCGGCGGUa -3' miRNA: 3'- gaaGCu--CGU-CUU---------GCGGCGGCCGCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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