miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 63549 0.67 0.43941
Target:  5'- --aCGuccGCGcGAAaugucccgcCGCCGCCGGCGGUa -3'
miRNA:   3'- gaaGCu--CGU-CUU---------GCGGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 61134 0.69 0.336188
Target:  5'- --gCGGcCAGGACGCCGCCcGGCGccGCg -3'
miRNA:   3'- gaaGCUcGUCUUGCGGCGG-CCGC--CGa -5'
24086 3' -60 NC_005262.1 + 60489 0.69 0.344082
Target:  5'- -aUCaGGGCGaGACGCCggGCCGcGCGGCg -3'
miRNA:   3'- gaAG-CUCGUcUUGCGG--CGGC-CGCCGa -5'
24086 3' -60 NC_005262.1 + 60116 0.66 0.527572
Target:  5'- -gUCGGGCacgAGGGCGCCaGCgucGCGGCg -3'
miRNA:   3'- gaAGCUCG---UCUUGCGG-CGgc-CGCCGa -5'
24086 3' -60 NC_005262.1 + 59710 0.67 0.420967
Target:  5'- --gCGGGCGcuACGUCGCCGGCaaGGUg -3'
miRNA:   3'- gaaGCUCGUcuUGCGGCGGCCG--CCGa -5'
24086 3' -60 NC_005262.1 + 59286 0.68 0.376975
Target:  5'- -gUCGcGCGGAucaacgaggacAUGCCGgaCGGCGGCUc -3'
miRNA:   3'- gaAGCuCGUCU-----------UGCGGCg-GCCGCCGA- -5'
24086 3' -60 NC_005262.1 + 59224 0.71 0.245629
Target:  5'- --cCGAGCA--GCGCCGCCGcUGGCg -3'
miRNA:   3'- gaaGCUCGUcuUGCGGCGGCcGCCGa -5'
24086 3' -60 NC_005262.1 + 58956 0.71 0.258122
Target:  5'- --gCGcAGCAgucGAACcagccgGCCGCCGGCGGCc -3'
miRNA:   3'- gaaGC-UCGU---CUUG------CGGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 58758 0.67 0.467916
Target:  5'- --cCGAuCAG-GCGCCgGCCGGCGaGCa -3'
miRNA:   3'- gaaGCUcGUCuUGCGG-CGGCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 58693 0.67 0.458306
Target:  5'- --gCGAGC---GCGCaacaaGCUGGCGGCa -3'
miRNA:   3'- gaaGCUCGucuUGCGg----CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 58659 0.72 0.216588
Target:  5'- --cCGAGCAGGaucaGCGCCGCCcgucgcgcauGGCaGGCa -3'
miRNA:   3'- gaaGCUCGUCU----UGCGGCGG----------CCG-CCGa -5'
24086 3' -60 NC_005262.1 + 58586 0.66 0.487438
Target:  5'- -aUCGuGCAGGauACGCCcucggucgcGCCGGCcGCg -3'
miRNA:   3'- gaAGCuCGUCU--UGCGG---------CGGCCGcCGa -5'
24086 3' -60 NC_005262.1 + 58180 0.68 0.385523
Target:  5'- -cUCGGGCgAGGucgcgaacaucgACGCCGCCG-CGGUg -3'
miRNA:   3'- gaAGCUCG-UCU------------UGCGGCGGCcGCCGa -5'
24086 3' -60 NC_005262.1 + 57789 0.68 0.368556
Target:  5'- --gCGAGCAGAGCGaCCGCaagGGaCGGg- -3'
miRNA:   3'- gaaGCUCGUCUUGC-GGCGg--CC-GCCga -5'
24086 3' -60 NC_005262.1 + 57404 0.72 0.227835
Target:  5'- -aUCGAGCuGAcCGCCGagaaGGCGGCc -3'
miRNA:   3'- gaAGCUCGuCUuGCGGCgg--CCGCCGa -5'
24086 3' -60 NC_005262.1 + 57224 0.69 0.328427
Target:  5'- -aUgGAGCcuGAucGCGCCGCucguCGGCGGCa -3'
miRNA:   3'- gaAgCUCGu-CU--UGCGGCG----GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 57072 0.7 0.277829
Target:  5'- --cCGAGCAGAuCGgCGagauCGGCGGCUu -3'
miRNA:   3'- gaaGCUCGUCUuGCgGCg---GCCGCCGA- -5'
24086 3' -60 NC_005262.1 + 56894 0.69 0.336188
Target:  5'- -gUCGAGCGcGAcaacACGCuCGCCGGCGa-- -3'
miRNA:   3'- gaAGCUCGU-CU----UGCG-GCGGCCGCcga -5'
24086 3' -60 NC_005262.1 + 56765 0.66 0.476652
Target:  5'- -gUCGGGCGacGAGCGCUacaugaaGCUGGcCGGCc -3'
miRNA:   3'- gaAGCUCGU--CUUGCGG-------CGGCC-GCCGa -5'
24086 3' -60 NC_005262.1 + 55796 1.07 0.000531
Target:  5'- gCUUCGAGCAGAACGCCGCCGGCGGCUa -3'
miRNA:   3'- -GAAGCUCGUCUUGCGGCGGCCGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.