miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 55411 0.73 0.195516
Target:  5'- -aUCGAGCAgcucGAGCGCCgGCUGGaGGCg -3'
miRNA:   3'- gaAGCUCGU----CUUGCGG-CGGCCgCCGa -5'
24086 3' -60 NC_005262.1 + 53829 0.68 0.384663
Target:  5'- -aUCGAGCuGAcgcaccgGCGCgGCgCGGaCGGCa -3'
miRNA:   3'- gaAGCUCGuCU-------UGCGgCG-GCC-GCCGa -5'
24086 3' -60 NC_005262.1 + 52811 0.66 0.517415
Target:  5'- aUUCGcaguGGCAG-GCGCuCGgCGaGCGGCUg -3'
miRNA:   3'- gAAGC----UCGUCuUGCG-GCgGC-CGCCGA- -5'
24086 3' -60 NC_005262.1 + 52690 0.77 0.10026
Target:  5'- -cUCGAGCAGGAagGCCGCCGGCcgacgccggacgaGGCc -3'
miRNA:   3'- gaAGCUCGUCUUg-CGGCGGCCG-------------CCGa -5'
24086 3' -60 NC_005262.1 + 52595 0.68 0.367722
Target:  5'- -cUCGAucuuGCAGGugGCgCGCacgaucaCGGCGGCg -3'
miRNA:   3'- gaAGCU----CGUCUugCG-GCG-------GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 52216 0.71 0.251812
Target:  5'- -cUCGAGCGcuGGcCGCCGCCGGCauaGCa -3'
miRNA:   3'- gaAGCUCGU--CUuGCGGCGGCCGc--CGa -5'
24086 3' -60 NC_005262.1 + 51500 0.67 0.467916
Target:  5'- -aUCGAGCGGAucgGCCGCaaCGGCGa-- -3'
miRNA:   3'- gaAGCUCGUCUug-CGGCG--GCCGCcga -5'
24086 3' -60 NC_005262.1 + 51198 0.67 0.448803
Target:  5'- ---aGGGCGcGcucauccgcGACGCCucGCCGGCGGCa -3'
miRNA:   3'- gaagCUCGU-C---------UUGCGG--CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 49961 0.67 0.467916
Target:  5'- gUUCGAGCcGAuCGCCGacgagaCaGCGGCg -3'
miRNA:   3'- gAAGCUCGuCUuGCGGCg-----GcCGCCGa -5'
24086 3' -60 NC_005262.1 + 49822 0.67 0.438477
Target:  5'- -aUCG-GCcgcgcgauGGAGCGCgcgaauggcccggUGCCGGCGGCg -3'
miRNA:   3'- gaAGCuCG--------UCUUGCG-------------GCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 49720 0.66 0.514383
Target:  5'- --cCGGGCGGcgaaccGGCgGCCgaagccgcaccgacGCCGGCGGCg -3'
miRNA:   3'- gaaGCUCGUC------UUG-CGG--------------CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 49340 0.67 0.436614
Target:  5'- --aCGAGCAGGcgcGCGCCGCgcucgcugacgacuCGGCGacGCg -3'
miRNA:   3'- gaaGCUCGUCU---UGCGGCG--------------GCCGC--CGa -5'
24086 3' -60 NC_005262.1 + 48958 0.71 0.239573
Target:  5'- -gUCGccAGCAuGACGCCGCagaugcaGGCGGCg -3'
miRNA:   3'- gaAGC--UCGUcUUGCGGCGg------CCGCCGa -5'
24086 3' -60 NC_005262.1 + 48344 0.7 0.298716
Target:  5'- -cUCG-GCAcGAccgacccgGCGCUGCUGGCGGCc -3'
miRNA:   3'- gaAGCuCGU-CU--------UGCGGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 48190 0.67 0.43941
Target:  5'- uUUCGGcacGCGGGacaguaauaaggGCGCgGUCGGUGGCa -3'
miRNA:   3'- gAAGCU---CGUCU------------UGCGgCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 47717 0.66 0.511358
Target:  5'- --cCGGGCGGcggcucgccgccuguAucugguGCGCCGCCGGCcgcGGCg -3'
miRNA:   3'- gaaGCUCGUC---------------U------UGCGGCGGCCG---CCGa -5'
24086 3' -60 NC_005262.1 + 47666 0.71 0.27113
Target:  5'- -aUCGAGCAGGACaugaaGCUGaucuaCGGCGGUc -3'
miRNA:   3'- gaAGCUCGUCUUG-----CGGCg----GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 46802 0.73 0.190536
Target:  5'- --aCGAGCGc-GCGCUcgGCCGGCGGCa -3'
miRNA:   3'- gaaGCUCGUcuUGCGG--CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 46231 0.67 0.43941
Target:  5'- -cUCG-GCuucGcGCGCCGCCG-CGGCUg -3'
miRNA:   3'- gaAGCuCGu--CuUGCGGCGGCcGCCGA- -5'
24086 3' -60 NC_005262.1 + 45872 0.66 0.487438
Target:  5'- -cUCGccguuGGCGucGGCGCCGaUCGGCGGCUc -3'
miRNA:   3'- gaAGC-----UCGUc-UUGCGGC-GGCCGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.