Results 41 - 60 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24086 | 3' | -60 | NC_005262.1 | + | 45518 | 0.66 | 0.477628 |
Target: 5'- -aUCGAGCGccacGAGCGCauuGCacugcaauuuucCGGCGGCa -3' miRNA: 3'- gaAGCUCGU----CUUGCGg--CG------------GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 44958 | 0.74 | 0.150536 |
Target: 5'- ---gGAGCAGAugGCCGCCGa-GGCg -3' miRNA: 3'- gaagCUCGUCUugCGGCGGCcgCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 44165 | 0.7 | 0.277829 |
Target: 5'- -aUCGGGCAgGAGCGCgG-CGGCGaGCUc -3' miRNA: 3'- gaAGCUCGU-CUUGCGgCgGCCGC-CGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 43610 | 0.71 | 0.251812 |
Target: 5'- -aUCGcGCAGGugACGCuCGCCGGCaccGGCg -3' miRNA: 3'- gaAGCuCGUCU--UGCG-GCGGCCG---CCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 43567 | 0.66 | 0.497343 |
Target: 5'- -aUCG-GCAaauuGGGCGCUGCgauugaGGCGGCUu -3' miRNA: 3'- gaAGCuCGU----CUUGCGGCGg-----CCGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 43466 | 0.66 | 0.477628 |
Target: 5'- -aUCGAGUcGA--GCCGCUucguGGCGGCg -3' miRNA: 3'- gaAGCUCGuCUugCGGCGG----CCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 43323 | 0.69 | 0.360267 |
Target: 5'- --cCGAGgAGGAaGCCGCUgaacaGGCGGCg -3' miRNA: 3'- gaaGCUCgUCUUgCGGCGG-----CCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 43271 | 0.66 | 0.50133 |
Target: 5'- cCUUCGAGUGGGgugaggucgucgcgaGCGCCGCgccgaUGGUGcGCg -3' miRNA: 3'- -GAAGCUCGUCU---------------UGCGGCG-----GCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 41661 | 0.68 | 0.402998 |
Target: 5'- uUUCcGGCGGcgccgucauCGCCGCCGGCaccGGCa -3' miRNA: 3'- gAAGcUCGUCuu-------GCGGCGGCCG---CCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 41211 | 0.66 | 0.507336 |
Target: 5'- gCUUCGAGCAccguAUGaCUGCCGGCacGCUc -3' miRNA: 3'- -GAAGCUCGUcu--UGC-GGCGGCCGc-CGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 40546 | 0.67 | 0.447859 |
Target: 5'- --gCGGGCGGcucuuacGCGCCGggcaacaCCGGCGGUg -3' miRNA: 3'- gaaGCUCGUCu------UGCGGC-------GGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 40331 | 0.67 | 0.420967 |
Target: 5'- gCUUCGAGCAucG-GCUcacgGCCGGCGcGCUg -3' miRNA: 3'- -GAAGCUCGUcuUgCGG----CGGCCGC-CGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 40099 | 0.68 | 0.384663 |
Target: 5'- -gUCGAccgugcgccgGUAGAcccacacGCGCCGCUcgGGCGGCa -3' miRNA: 3'- gaAGCU----------CGUCU-------UGCGGCGG--CCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 39401 | 0.71 | 0.251812 |
Target: 5'- cCUUC--GCGGAcgugcGCGCCGCCGGUuuGGCg -3' miRNA: 3'- -GAAGcuCGUCU-----UGCGGCGGCCG--CCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 36992 | 0.68 | 0.394198 |
Target: 5'- --cCGAGCcccaAGAACGUCGgcgagacggacaUCGGCGGCg -3' miRNA: 3'- gaaGCUCG----UCUUGCGGC------------GGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 36212 | 0.71 | 0.269145 |
Target: 5'- -gUCGAGCGGAuuggcaggcuucucGCGCUGCgCGGCguccucgccggGGCUg -3' miRNA: 3'- gaAGCUCGUCU--------------UGCGGCG-GCCG-----------CCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 34562 | 0.68 | 0.393325 |
Target: 5'- --aCGAGCAGGucgagcaucgucaGCGCgaucuCCGGCGGCa -3' miRNA: 3'- gaaGCUCGUCU-------------UGCGgc---GGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 34483 | 0.69 | 0.328427 |
Target: 5'- gUUCGAGCAcau--CCGCgCGGCGGCg -3' miRNA: 3'- gAAGCUCGUcuugcGGCG-GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 34128 | 0.72 | 0.233642 |
Target: 5'- -gUUGGGCGGGcuGCGCgggCGCgGGCGGCa -3' miRNA: 3'- gaAGCUCGUCU--UGCG---GCGgCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 33976 | 0.66 | 0.514383 |
Target: 5'- -gUCGAGCugcuGGACGUCGUgcguaacaugggcgCGGaCGGCg -3' miRNA: 3'- gaAGCUCGu---CUUGCGGCG--------------GCC-GCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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