miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 5188 0.7 0.305944
Target:  5'- --gCGGGCGcGGGCGCgGCCGGCG-Cg -3'
miRNA:   3'- gaaGCUCGU-CUUGCGgCGGCCGCcGa -5'
24086 3' -60 NC_005262.1 + 58956 0.71 0.258122
Target:  5'- --gCGcAGCAgucGAACcagccgGCCGCCGGCGGCc -3'
miRNA:   3'- gaaGC-UCGU---CUUG------CGGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 21544 0.71 0.27113
Target:  5'- -cUCGcgguccugaAGCAGAugcCGCCGCCuggaaacgagGGCGGCUa -3'
miRNA:   3'- gaAGC---------UCGUCUu--GCGGCGG----------CCGCCGA- -5'
24086 3' -60 NC_005262.1 + 47666 0.71 0.27113
Target:  5'- -aUCGAGCAGGACaugaaGCUGaucuaCGGCGGUc -3'
miRNA:   3'- gaAGCUCGUCUUG-----CGGCg----GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 57072 0.7 0.277829
Target:  5'- --cCGAGCAGAuCGgCGagauCGGCGGCUu -3'
miRNA:   3'- gaaGCUCGUCUuGCgGCg---GCCGCCGA- -5'
24086 3' -60 NC_005262.1 + 44165 0.7 0.277829
Target:  5'- -aUCGGGCAgGAGCGCgG-CGGCGaGCUc -3'
miRNA:   3'- gaAGCUCGU-CUUGCGgCgGCCGC-CGA- -5'
24086 3' -60 NC_005262.1 + 9744 0.7 0.284659
Target:  5'- --gCGAGCGGAuACGUCGaggagaaauUCGGCGGCa -3'
miRNA:   3'- gaaGCUCGUCU-UGCGGC---------GGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 12803 0.7 0.291621
Target:  5'- -aUUGGGCGGcGCGCaGCCGGCGcGUg -3'
miRNA:   3'- gaAGCUCGUCuUGCGgCGGCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 48344 0.7 0.298716
Target:  5'- -cUCG-GCAcGAccgacccgGCGCUGCUGGCGGCc -3'
miRNA:   3'- gaAGCuCGU-CU--------UGCGGCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 43610 0.71 0.251812
Target:  5'- -aUCGcGCAGGugACGCuCGCCGGCaccGGCg -3'
miRNA:   3'- gaAGCuCGUCU--UGCG-GCGGCCG---CCGa -5'
24086 3' -60 NC_005262.1 + 14246 0.71 0.251812
Target:  5'- --aCGAGCAGGACGCagcguCGCCGGagacggaagUGGCa -3'
miRNA:   3'- gaaGCUCGUCUUGCG-----GCGGCC---------GCCGa -5'
24086 3' -60 NC_005262.1 + 48958 0.71 0.239573
Target:  5'- -gUCGccAGCAuGACGCCGCagaugcaGGCGGCg -3'
miRNA:   3'- gaAGC--UCGUcUUGCGGCGg------CCGCCGa -5'
24086 3' -60 NC_005262.1 + 52690 0.77 0.10026
Target:  5'- -cUCGAGCAGGAagGCCGCCGGCcgacgccggacgaGGCc -3'
miRNA:   3'- gaAGCUCGUCUUg-CGGCGGCCG-------------CCGa -5'
24086 3' -60 NC_005262.1 + 44958 0.74 0.150536
Target:  5'- ---gGAGCAGAugGCCGCCGa-GGCg -3'
miRNA:   3'- gaagCUCGUCUugCGGCGGCcgCCGa -5'
24086 3' -60 NC_005262.1 + 12100 0.73 0.176259
Target:  5'- uUUCGGGCGcaaucAGCGCCGCCGuGCGcGCg -3'
miRNA:   3'- gAAGCUCGUc----UUGCGGCGGC-CGC-CGa -5'
24086 3' -60 NC_005262.1 + 32675 0.73 0.195516
Target:  5'- gCUUCGAGUuc-GCGCUGCCGGCcgccGGCc -3'
miRNA:   3'- -GAAGCUCGucuUGCGGCGGCCG----CCGa -5'
24086 3' -60 NC_005262.1 + 55411 0.73 0.195516
Target:  5'- -aUCGAGCAgcucGAGCGCCgGCUGGaGGCg -3'
miRNA:   3'- gaAGCUCGU----CUUGCGG-CGGCCgCCGa -5'
24086 3' -60 NC_005262.1 + 12575 0.72 0.205819
Target:  5'- -gUCGAGCugcuGCuGCCGCCGGCgaGGCg -3'
miRNA:   3'- gaAGCUCGucu-UG-CGGCGGCCG--CCGa -5'
24086 3' -60 NC_005262.1 + 33319 0.72 0.227261
Target:  5'- -gUCGAGuCGGAcgcaacuGCGUCGCUGcGCGGCa -3'
miRNA:   3'- gaAGCUC-GUCU-------UGCGGCGGC-CGCCGa -5'
24086 3' -60 NC_005262.1 + 57404 0.72 0.227835
Target:  5'- -aUCGAGCuGAcCGCCGagaaGGCGGCc -3'
miRNA:   3'- gaAGCUCGuCUuGCGGCgg--CCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.