Results 81 - 100 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24086 | 3' | -60 | NC_005262.1 | + | 16049 | 0.69 | 0.320799 |
Target: 5'- --cCGGGUucgcCGCgGCCGGCGGCg -3' miRNA: 3'- gaaGCUCGucuuGCGgCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 30891 | 0.7 | 0.298716 |
Target: 5'- -gUCGcGCGugcGACGCCGCCGGCuuGGCc -3' miRNA: 3'- gaAGCuCGUc--UUGCGGCGGCCG--CCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 29293 | 0.7 | 0.284659 |
Target: 5'- -gUCGucucGCAGAagucgcGCGCCGCCGcGCGGa- -3' miRNA: 3'- gaAGCu---CGUCU------UGCGGCGGC-CGCCga -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 19124 | 0.7 | 0.277829 |
Target: 5'- -aUCGGGCGcGGgcGCGUCGCCGGCGuCUu -3' miRNA: 3'- gaAGCUCGU-CU--UGCGGCGGCCGCcGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 51198 | 0.67 | 0.448803 |
Target: 5'- ---aGGGCGcGcucauccgcGACGCCucGCCGGCGGCa -3' miRNA: 3'- gaagCUCGU-C---------UUGCGG--CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 13150 | 0.67 | 0.448803 |
Target: 5'- -cUgGAGCcGGuUGCUGCuCGGCGGCg -3' miRNA: 3'- gaAgCUCGuCUuGCGGCG-GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 9942 | 0.66 | 0.524517 |
Target: 5'- -cUUGAGCGcGAucugcuugccguccGCGCCgcGCCGGUGGUc -3' miRNA: 3'- gaAGCUCGU-CU--------------UGCGG--CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 29578 | 0.66 | 0.506333 |
Target: 5'- -gUCGAGCGuguCGCCcgaagccgcgaucGCgGGCGGCa -3' miRNA: 3'- gaAGCUCGUcuuGCGG-------------CGgCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 43271 | 0.66 | 0.50133 |
Target: 5'- cCUUCGAGUGGGgugaggucgucgcgaGCGCCGCgccgaUGGUGcGCg -3' miRNA: 3'- -GAAGCUCGUCU---------------UGCGGCG-----GCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 43567 | 0.66 | 0.497343 |
Target: 5'- -aUCG-GCAaauuGGGCGCUGCgauugaGGCGGCUu -3' miRNA: 3'- gaAGCuCGU----CUUGCGGCGg-----CCGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 13778 | 0.66 | 0.497343 |
Target: 5'- -cUCGGGCuucacuucGGugGgCGCCGGCgcGGCUu -3' miRNA: 3'- gaAGCUCGu-------CUugCgGCGGCCG--CCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 21349 | 0.66 | 0.497343 |
Target: 5'- --gCGAGCGGuagauGCGCUGCuucgugauguugCGGCcGGCUg -3' miRNA: 3'- gaaGCUCGUCu----UGCGGCG------------GCCG-CCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58586 | 0.66 | 0.487438 |
Target: 5'- -aUCGuGCAGGauACGCCcucggucgcGCCGGCcGCg -3' miRNA: 3'- gaAGCuCGUCU--UGCGG---------CGGCCGcCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 45872 | 0.66 | 0.487438 |
Target: 5'- -cUCGccguuGGCGucGGCGCCGaUCGGCGGCUc -3' miRNA: 3'- gaAGC-----UCGUc-UUGCGGC-GGCCGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 29035 | 0.66 | 0.477628 |
Target: 5'- --cCGAGCucGAGCGgCGCCGGCacgacGCg -3' miRNA: 3'- gaaGCUCGu-CUUGCgGCGGCCGc----CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 16940 | 0.66 | 0.477628 |
Target: 5'- cCUUCuuGCGGAAgaaguccaGCaCGCCGGCGcGCUu -3' miRNA: 3'- -GAAGcuCGUCUUg-------CG-GCGGCCGC-CGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 9466 | 0.66 | 0.474704 |
Target: 5'- -aUCGAGguGccgagcgcgucgauGACGUC-CUGGCGGCUc -3' miRNA: 3'- gaAGCUCguC--------------UUGCGGcGGCCGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58758 | 0.67 | 0.467916 |
Target: 5'- --cCGAuCAG-GCGCCgGCCGGCGaGCa -3' miRNA: 3'- gaaGCUcGUCuUGCGG-CGGCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 27649 | 0.67 | 0.458306 |
Target: 5'- -cUCGAGCuGGuCGaucgCGCUGGCGGUg -3' miRNA: 3'- gaAGCUCGuCUuGCg---GCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 29202 | 0.67 | 0.448803 |
Target: 5'- -cUCGAucucGUGGAucacgGCGCCGCaCGGCGcGCa -3' miRNA: 3'- gaAGCU----CGUCU-----UGCGGCG-GCCGC-CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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