Results 101 - 117 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24086 | 3' | -60 | NC_005262.1 | + | 43567 | 0.66 | 0.497343 |
Target: 5'- -aUCG-GCAaauuGGGCGCUGCgauugaGGCGGCUu -3' miRNA: 3'- gaAGCuCGU----CUUGCGGCGg-----CCGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 43271 | 0.66 | 0.50133 |
Target: 5'- cCUUCGAGUGGGgugaggucgucgcgaGCGCCGCgccgaUGGUGcGCg -3' miRNA: 3'- -GAAGCUCGUCU---------------UGCGGCG-----GCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 29578 | 0.66 | 0.506333 |
Target: 5'- -gUCGAGCGuguCGCCcgaagccgcgaucGCgGGCGGCa -3' miRNA: 3'- gaAGCUCGUcuuGCGG-------------CGgCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 9942 | 0.66 | 0.524517 |
Target: 5'- -cUUGAGCGcGAucugcuugccguccGCGCCgcGCCGGUGGUc -3' miRNA: 3'- gaAGCUCGU-CU--------------UGCGG--CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 9466 | 0.66 | 0.474704 |
Target: 5'- -aUCGAGguGccgagcgcgucgauGACGUC-CUGGCGGCUc -3' miRNA: 3'- gaAGCUCguC--------------UUGCGGcGGCCGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58758 | 0.67 | 0.467916 |
Target: 5'- --cCGAuCAG-GCGCCgGCCGGCGaGCa -3' miRNA: 3'- gaaGCUcGUCuUGCGG-CGGCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 22676 | 0.68 | 0.388978 |
Target: 5'- --cCGAGCGcgccgugacgcgcacGAucucgACGUgGCCGGCGGCg -3' miRNA: 3'- gaaGCUCGU---------------CU-----UGCGgCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 34562 | 0.68 | 0.393325 |
Target: 5'- --aCGAGCAGGucgagcaucgucaGCGCgaucuCCGGCGGCa -3' miRNA: 3'- gaaGCUCGUCU-------------UGCGgc---GGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 31088 | 0.68 | 0.402998 |
Target: 5'- --cCGAGCucgauGAuguCGCCcaccuggagGCCGGCGGCc -3' miRNA: 3'- gaaGCUCGu----CUu--GCGG---------CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 10890 | 0.68 | 0.411922 |
Target: 5'- -aUCGAGCGGAucACGCCcucGCUGGUGuaguGCg -3' miRNA: 3'- gaAGCUCGUCU--UGCGG---CGGCCGC----CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 46231 | 0.67 | 0.43941 |
Target: 5'- -cUCG-GCuucGcGCGCCGCCG-CGGCUg -3' miRNA: 3'- gaAGCuCGu--CuUGCGGCGGCcGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 4282 | 0.67 | 0.447859 |
Target: 5'- cCUUCGGGCcauacuCGCCGUCGcccuucaGCGGCa -3' miRNA: 3'- -GAAGCUCGucuu--GCGGCGGC-------CGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 51198 | 0.67 | 0.448803 |
Target: 5'- ---aGGGCGcGcucauccgcGACGCCucGCCGGCGGCa -3' miRNA: 3'- gaagCUCGU-C---------UUGCGG--CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 13150 | 0.67 | 0.448803 |
Target: 5'- -cUgGAGCcGGuUGCUGCuCGGCGGCg -3' miRNA: 3'- gaAgCUCGuCUuGCGGCG-GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 29202 | 0.67 | 0.448803 |
Target: 5'- -cUCGAucucGUGGAucacgGCGCCGCaCGGCGcGCa -3' miRNA: 3'- gaAGCU----CGUCU-----UGCGGCG-GCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 27649 | 0.67 | 0.458306 |
Target: 5'- -cUCGAGCuGGuCGaucgCGCUGGCGGUg -3' miRNA: 3'- gaAGCUCGuCUuGCg---GCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 3578 | 0.66 | 0.527572 |
Target: 5'- cCUUC-AGCAGcuUGCCgaccucGCCGGcCGGCUc -3' miRNA: 3'- -GAAGcUCGUCuuGCGG------CGGCC-GCCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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