miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 3578 0.66 0.527572
Target:  5'- cCUUC-AGCAGcuUGCCgaccucGCCGGcCGGCUc -3'
miRNA:   3'- -GAAGcUCGUCuuGCGG------CGGCC-GCCGA- -5'
24086 3' -60 NC_005262.1 + 4282 0.67 0.447859
Target:  5'- cCUUCGGGCcauacuCGCCGUCGcccuucaGCGGCa -3'
miRNA:   3'- -GAAGCUCGucuu--GCGGCGGC-------CGCCGa -5'
24086 3' -60 NC_005262.1 + 10890 0.68 0.411922
Target:  5'- -aUCGAGCGGAucACGCCcucGCUGGUGuaguGCg -3'
miRNA:   3'- gaAGCUCGUCU--UGCGG---CGGCCGC----CGa -5'
24086 3' -60 NC_005262.1 + 12504 0.81 0.054702
Target:  5'- -gUCGAGCGGcauGCGCagcaGCCGGCGGCc -3'
miRNA:   3'- gaAGCUCGUCu--UGCGg---CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 43567 0.66 0.497343
Target:  5'- -aUCG-GCAaauuGGGCGCUGCgauugaGGCGGCUu -3'
miRNA:   3'- gaAGCuCGU----CUUGCGGCGg-----CCGCCGA- -5'
24086 3' -60 NC_005262.1 + 13778 0.66 0.497343
Target:  5'- -cUCGGGCuucacuucGGugGgCGCCGGCgcGGCUu -3'
miRNA:   3'- gaAGCUCGu-------CUugCgGCGGCCG--CCGA- -5'
24086 3' -60 NC_005262.1 + 58586 0.66 0.487438
Target:  5'- -aUCGuGCAGGauACGCCcucggucgcGCCGGCcGCg -3'
miRNA:   3'- gaAGCuCGUCU--UGCGG---------CGGCCGcCGa -5'
24086 3' -60 NC_005262.1 + 45872 0.66 0.487438
Target:  5'- -cUCGccguuGGCGucGGCGCCGaUCGGCGGCUc -3'
miRNA:   3'- gaAGC-----UCGUc-UUGCGGC-GGCCGCCGA- -5'
24086 3' -60 NC_005262.1 + 9466 0.66 0.474704
Target:  5'- -aUCGAGguGccgagcgcgucgauGACGUC-CUGGCGGCUc -3'
miRNA:   3'- gaAGCUCguC--------------UUGCGGcGGCCGCCGA- -5'
24086 3' -60 NC_005262.1 + 51198 0.67 0.448803
Target:  5'- ---aGGGCGcGcucauccgcGACGCCucGCCGGCGGCa -3'
miRNA:   3'- gaagCUCGU-C---------UUGCGG--CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 27649 0.67 0.458306
Target:  5'- -cUCGAGCuGGuCGaucgCGCUGGCGGUg -3'
miRNA:   3'- gaAGCUCGuCUuGCg---GCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 16940 0.66 0.477628
Target:  5'- cCUUCuuGCGGAAgaaguccaGCaCGCCGGCGcGCUu -3'
miRNA:   3'- -GAAGcuCGUCUUg-------CG-GCGGCCGC-CGA- -5'
24086 3' -60 NC_005262.1 + 9942 0.66 0.524517
Target:  5'- -cUUGAGCGcGAucugcuugccguccGCGCCgcGCCGGUGGUc -3'
miRNA:   3'- gaAGCUCGU-CU--------------UGCGG--CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 29202 0.67 0.448803
Target:  5'- -cUCGAucucGUGGAucacgGCGCCGCaCGGCGcGCa -3'
miRNA:   3'- gaAGCU----CGUCU-----UGCGGCG-GCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 29578 0.66 0.506333
Target:  5'- -gUCGAGCGuguCGCCcgaagccgcgaucGCgGGCGGCa -3'
miRNA:   3'- gaAGCUCGUcuuGCGG-------------CGgCCGCCGa -5'
24086 3' -60 NC_005262.1 + 29035 0.66 0.477628
Target:  5'- --cCGAGCucGAGCGgCGCCGGCacgacGCg -3'
miRNA:   3'- gaaGCUCGu-CUUGCgGCGGCCGc----CGa -5'
24086 3' -60 NC_005262.1 + 13150 0.67 0.448803
Target:  5'- -cUgGAGCcGGuUGCUGCuCGGCGGCg -3'
miRNA:   3'- gaAgCUCGuCUuGCGGCG-GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 46231 0.67 0.43941
Target:  5'- -cUCG-GCuucGcGCGCCGCCG-CGGCUg -3'
miRNA:   3'- gaAGCuCGu--CuUGCGGCGGCcGCCGA- -5'
24086 3' -60 NC_005262.1 + 43271 0.66 0.50133
Target:  5'- cCUUCGAGUGGGgugaggucgucgcgaGCGCCGCgccgaUGGUGcGCg -3'
miRNA:   3'- -GAAGCUCGUCU---------------UGCGGCG-----GCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 21349 0.66 0.497343
Target:  5'- --gCGAGCGGuagauGCGCUGCuucgugauguugCGGCcGGCUg -3'
miRNA:   3'- gaaGCUCGUCu----UGCGGCG------------GCCG-CCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.