Results 21 - 40 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24086 | 3' | -60 | NC_005262.1 | + | 22676 | 0.68 | 0.388978 |
Target: 5'- --cCGAGCGcgccgugacgcgcacGAucucgACGUgGCCGGCGGCg -3' miRNA: 3'- gaaGCUCGU---------------CU-----UGCGgCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 10890 | 0.68 | 0.411922 |
Target: 5'- -aUCGAGCGGAucACGCCcucGCUGGUGuaguGCg -3' miRNA: 3'- gaAGCUCGUCU--UGCGG---CGGCCGC----CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 16940 | 0.66 | 0.477628 |
Target: 5'- cCUUCuuGCGGAAgaaguccaGCaCGCCGGCGcGCUu -3' miRNA: 3'- -GAAGcuCGUCUUg-------CG-GCGGCCGC-CGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 43271 | 0.66 | 0.50133 |
Target: 5'- cCUUCGAGUGGGgugaggucgucgcgaGCGCCGCgccgaUGGUGcGCg -3' miRNA: 3'- -GAAGCUCGUCU---------------UGCGGCG-----GCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 7972 | 0.71 | 0.258122 |
Target: 5'- aCUUCGcgaAGCGcucacGAccucguaGCCGCCGGCGGCg -3' miRNA: 3'- -GAAGC---UCGU-----CUug-----CGGCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 57224 | 0.69 | 0.328427 |
Target: 5'- -aUgGAGCcuGAucGCGCCGCucguCGGCGGCa -3' miRNA: 3'- gaAgCUCGu-CU--UGCGGCG----GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 4282 | 0.67 | 0.447859 |
Target: 5'- cCUUCGGGCcauacuCGCCGUCGcccuucaGCGGCa -3' miRNA: 3'- -GAAGCUCGucuu--GCGGCGGC-------CGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 29578 | 0.66 | 0.506333 |
Target: 5'- -gUCGAGCGuguCGCCcgaagccgcgaucGCgGGCGGCa -3' miRNA: 3'- gaAGCUCGUcuuGCGG-------------CGgCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 61134 | 0.69 | 0.336188 |
Target: 5'- --gCGGcCAGGACGCCGCCcGGCGccGCg -3' miRNA: 3'- gaaGCUcGUCUUGCGGCGG-CCGC--CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 9942 | 0.66 | 0.524517 |
Target: 5'- -cUUGAGCGcGAucugcuugccguccGCGCCgcGCCGGUGGUc -3' miRNA: 3'- gaAGCUCGU-CU--------------UGCGG--CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 46231 | 0.67 | 0.43941 |
Target: 5'- -cUCG-GCuucGcGCGCCGCCG-CGGCUg -3' miRNA: 3'- gaAGCuCGu--CuUGCGGCGGCcGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58180 | 0.68 | 0.385523 |
Target: 5'- -cUCGGGCgAGGucgcgaacaucgACGCCGCCG-CGGUg -3' miRNA: 3'- gaAGCUCG-UCU------------UGCGGCGGCcGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 29202 | 0.67 | 0.448803 |
Target: 5'- -cUCGAucucGUGGAucacgGCGCCGCaCGGCGcGCa -3' miRNA: 3'- gaAGCU----CGUCU-----UGCGGCG-GCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 9466 | 0.66 | 0.474704 |
Target: 5'- -aUCGAGguGccgagcgcgucgauGACGUC-CUGGCGGCUc -3' miRNA: 3'- gaAGCUCguC--------------UUGCGGcGGCCGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58586 | 0.66 | 0.487438 |
Target: 5'- -aUCGuGCAGGauACGCCcucggucgcGCCGGCcGCg -3' miRNA: 3'- gaAGCuCGUCU--UGCGG---------CGGCCGcCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 43567 | 0.66 | 0.497343 |
Target: 5'- -aUCG-GCAaauuGGGCGCUGCgauugaGGCGGCUu -3' miRNA: 3'- gaAGCuCGU----CUUGCGGCGg-----CCGCCGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 34128 | 0.72 | 0.233642 |
Target: 5'- -gUUGGGCGGGcuGCGCgggCGCgGGCGGCa -3' miRNA: 3'- gaAGCUCGUCU--UGCG---GCGgCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 52216 | 0.71 | 0.251812 |
Target: 5'- -cUCGAGCGcuGGcCGCCGCCGGCauaGCa -3' miRNA: 3'- gaAGCUCGU--CUuGCGGCGGCCGc--CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 19124 | 0.7 | 0.277829 |
Target: 5'- -aUCGGGCGcGGgcGCGUCGCCGGCGuCUu -3' miRNA: 3'- gaAGCUCGU-CU--UGCGGCGGCCGCcGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 16049 | 0.69 | 0.320799 |
Target: 5'- --cCGGGUucgcCGCgGCCGGCGGCg -3' miRNA: 3'- gaaGCUCGucuuGCGgCGGCCGCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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