miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 3' -60 NC_005262.1 + 30891 0.7 0.298716
Target:  5'- -gUCGcGCGugcGACGCCGCCGGCuuGGCc -3'
miRNA:   3'- gaAGCuCGUc--UUGCGGCGGCCG--CCGa -5'
24086 3' -60 NC_005262.1 + 52216 0.71 0.251812
Target:  5'- -cUCGAGCGcuGGcCGCCGCCGGCauaGCa -3'
miRNA:   3'- gaAGCUCGU--CUuGCGGCGGCCGc--CGa -5'
24086 3' -60 NC_005262.1 + 61134 0.69 0.336188
Target:  5'- --gCGGcCAGGACGCCGCCcGGCGccGCg -3'
miRNA:   3'- gaaGCUcGUCUUGCGGCGG-CCGC--CGa -5'
24086 3' -60 NC_005262.1 + 22676 0.68 0.388978
Target:  5'- --cCGAGCGcgccgugacgcgcacGAucucgACGUgGCCGGCGGCg -3'
miRNA:   3'- gaaGCUCGU---------------CU-----UGCGgCGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 10890 0.68 0.411922
Target:  5'- -aUCGAGCGGAucACGCCcucGCUGGUGuaguGCg -3'
miRNA:   3'- gaAGCUCGUCU--UGCGG---CGGCCGC----CGa -5'
24086 3' -60 NC_005262.1 + 29202 0.67 0.448803
Target:  5'- -cUCGAucucGUGGAucacgGCGCCGCaCGGCGcGCa -3'
miRNA:   3'- gaAGCU----CGUCU-----UGCGGCG-GCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 9466 0.66 0.474704
Target:  5'- -aUCGAGguGccgagcgcgucgauGACGUC-CUGGCGGCUc -3'
miRNA:   3'- gaAGCUCguC--------------UUGCGGcGGCCGCCGA- -5'
24086 3' -60 NC_005262.1 + 58586 0.66 0.487438
Target:  5'- -aUCGuGCAGGauACGCCcucggucgcGCCGGCcGCg -3'
miRNA:   3'- gaAGCuCGUCU--UGCGG---------CGGCCGcCGa -5'
24086 3' -60 NC_005262.1 + 12461 0.66 0.497343
Target:  5'- -gUCGAGacgucgcucaCGGGGCGCCGC--GCGGCa -3'
miRNA:   3'- gaAGCUC----------GUCUUGCGGCGgcCGCCGa -5'
24086 3' -60 NC_005262.1 + 2562 0.66 0.497343
Target:  5'- --aCGAuccGCgAGAACGUCucggagacgaGCCGGCGGCc -3'
miRNA:   3'- gaaGCU---CG-UCUUGCGG----------CGGCCGCCGa -5'
24086 3' -60 NC_005262.1 + 15060 0.66 0.496348
Target:  5'- gUUCGAGCAGGcaugguCGCUguacccgccucggGCCGGaGGCa -3'
miRNA:   3'- gAAGCUCGUCUu-----GCGG-------------CGGCCgCCGa -5'
24086 3' -60 NC_005262.1 + 10487 0.66 0.507336
Target:  5'- --gCGAccaGCAGcAGCGCCaGCaUGGCGGCc -3'
miRNA:   3'- gaaGCU---CGUC-UUGCGG-CG-GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 29653 0.66 0.487438
Target:  5'- --gCGAGCGGcAUGCCGCCcGCGcccGCg -3'
miRNA:   3'- gaaGCUCGUCuUGCGGCGGcCGC---CGa -5'
24086 3' -60 NC_005262.1 + 33619 0.69 0.344082
Target:  5'- --aCGucGCAGGAaaaGCCGCCGGCgcagguguccgaGGCUg -3'
miRNA:   3'- gaaGCu-CGUCUUg--CGGCGGCCG------------CCGA- -5'
24086 3' -60 NC_005262.1 + 60489 0.69 0.344082
Target:  5'- -aUCaGGGCGaGACGCCggGCCGcGCGGCg -3'
miRNA:   3'- gaAG-CUCGUcUUGCGG--CGGC-CGCCGa -5'
24086 3' -60 NC_005262.1 + 12263 0.69 0.360267
Target:  5'- -gUCGGGCAccugucGAuCGCgGCCGGCGaGCc -3'
miRNA:   3'- gaAGCUCGU------CUuGCGgCGGCCGC-CGa -5'
24086 3' -60 NC_005262.1 + 47666 0.71 0.27113
Target:  5'- -aUCGAGCAGGACaugaaGCUGaucuaCGGCGGUc -3'
miRNA:   3'- gaAGCUCGUCUUG-----CGGCg----GCCGCCGa -5'
24086 3' -60 NC_005262.1 + 12575 0.72 0.205819
Target:  5'- -gUCGAGCugcuGCuGCCGCCGGCgaGGCg -3'
miRNA:   3'- gaAGCUCGucu-UG-CGGCGGCCG--CCGa -5'
24086 3' -60 NC_005262.1 + 43323 0.69 0.360267
Target:  5'- --cCGAGgAGGAaGCCGCUgaacaGGCGGCg -3'
miRNA:   3'- gaaGCUCgUCUUgCGGCGG-----CCGCCGa -5'
24086 3' -60 NC_005262.1 + 21544 0.71 0.27113
Target:  5'- -cUCGcgguccugaAGCAGAugcCGCCGCCuggaaacgagGGCGGCUa -3'
miRNA:   3'- gaAGC---------UCGUCUu--GCGGCGG----------CCGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.