Results 81 - 100 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24086 | 3' | -60 | NC_005262.1 | + | 40546 | 0.67 | 0.447859 |
Target: 5'- --gCGGGCGGcucuuacGCGCCGggcaacaCCGGCGGUg -3' miRNA: 3'- gaaGCUCGUCu------UGCGGC-------GGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 58693 | 0.67 | 0.458306 |
Target: 5'- --gCGAGC---GCGCaacaaGCUGGCGGCa -3' miRNA: 3'- gaaGCUCGucuUGCGg----CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 49961 | 0.67 | 0.467916 |
Target: 5'- gUUCGAGCcGAuCGCCGacgagaCaGCGGCg -3' miRNA: 3'- gAAGCUCGuCUuGCGGCg-----GcCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 51500 | 0.67 | 0.467916 |
Target: 5'- -aUCGAGCGGAucgGCCGCaaCGGCGa-- -3' miRNA: 3'- gaAGCUCGUCUug-CGGCG--GCCGCcga -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 56765 | 0.66 | 0.476652 |
Target: 5'- -gUCGGGCGacGAGCGCUacaugaaGCUGGcCGGCc -3' miRNA: 3'- gaAGCUCGU--CUUGCGG-------CGGCC-GCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 43466 | 0.66 | 0.477628 |
Target: 5'- -aUCGAGUcGA--GCCGCUucguGGCGGCg -3' miRNA: 3'- gaAGCUCGuCUugCGGCGG----CCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 45518 | 0.66 | 0.477628 |
Target: 5'- -aUCGAGCGccacGAGCGCauuGCacugcaauuuucCGGCGGCa -3' miRNA: 3'- gaAGCUCGU----CUUGCGg--CG------------GCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 6553 | 0.66 | 0.487438 |
Target: 5'- gCUUCG-GCGuguUGCCGCCGacgaGCGGCg -3' miRNA: 3'- -GAAGCuCGUcuuGCGGCGGC----CGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 18294 | 0.66 | 0.487438 |
Target: 5'- uUUCGGGUAGGcGCGCCGguUCGcuucGCGGCg -3' miRNA: 3'- gAAGCUCGUCU-UGCGGC--GGC----CGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 48190 | 0.67 | 0.43941 |
Target: 5'- uUUCGGcacGCGGGacaguaauaaggGCGCgGUCGGUGGCa -3' miRNA: 3'- gAAGCU---CGUCU------------UGCGgCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 63549 | 0.67 | 0.43941 |
Target: 5'- --aCGuccGCGcGAAaugucccgcCGCCGCCGGCGGUa -3' miRNA: 3'- gaaGCu--CGU-CUU---------GCGGCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 36992 | 0.68 | 0.394198 |
Target: 5'- --cCGAGCcccaAGAACGUCGgcgagacggacaUCGGCGGCg -3' miRNA: 3'- gaaGCUCG----UCUUGCGGC------------GGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 41661 | 0.68 | 0.402998 |
Target: 5'- uUUCcGGCGGcgccgucauCGCCGCCGGCaccGGCa -3' miRNA: 3'- gAAGcUCGUCuu-------GCGGCGGCCG---CCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 32876 | 0.68 | 0.408338 |
Target: 5'- --cCGAGCuguucgccgcgucGAACGUCggccaaGCCGGCGGCg -3' miRNA: 3'- gaaGCUCGu------------CUUGCGG------CGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 7630 | 0.68 | 0.411922 |
Target: 5'- --aCGuuGGCcGAAUGUcgaCGCCGGCGGCg -3' miRNA: 3'- gaaGC--UCGuCUUGCG---GCGGCCGCCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 10957 | 0.67 | 0.420967 |
Target: 5'- --gCGcAGCAGGcauucGCGCUGUCGGCGcGCc -3' miRNA: 3'- gaaGC-UCGUCU-----UGCGGCGGCCGC-CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 40331 | 0.67 | 0.420967 |
Target: 5'- gCUUCGAGCAucG-GCUcacgGCCGGCGcGCUg -3' miRNA: 3'- -GAAGCUCGUcuUgCGG----CGGCCGC-CGA- -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 59710 | 0.67 | 0.420967 |
Target: 5'- --gCGGGCGcuACGUCGCCGGCaaGGUg -3' miRNA: 3'- gaaGCUCGUcuUGCGGCGGCCG--CCGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 49340 | 0.67 | 0.436614 |
Target: 5'- --aCGAGCAGGcgcGCGCCGCgcucgcugacgacuCGGCGacGCg -3' miRNA: 3'- gaaGCUCGUCU---UGCGGCG--------------GCCGC--CGa -5' |
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24086 | 3' | -60 | NC_005262.1 | + | 49822 | 0.67 | 0.438477 |
Target: 5'- -aUCG-GCcgcgcgauGGAGCGCgcgaauggcccggUGCCGGCGGCg -3' miRNA: 3'- gaAGCuCG--------UCUUGCG-------------GCGGCCGCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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