miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24086 5' -52.5 NC_005262.1 + 14159 0.66 0.882413
Target:  5'- -aGGCCGCcgaUCGCGAGG--CCAccGAGCg -3'
miRNA:   3'- acUCGGCGa--AGCGCUUCaaGGU--CUUG- -5'
24086 5' -52.5 NC_005262.1 + 55640 0.66 0.874619
Target:  5'- cGGGCCGCgcgcUCGUGGccgcgUCCGGcACg -3'
miRNA:   3'- aCUCGGCGa---AGCGCUuca--AGGUCuUG- -5'
24086 5' -52.5 NC_005262.1 + 25695 0.66 0.874619
Target:  5'- aGGGCCGCgaggGCGA-GUUCUAcAACa -3'
miRNA:   3'- aCUCGGCGaag-CGCUuCAAGGUcUUG- -5'
24086 5' -52.5 NC_005262.1 + 36776 0.66 0.874619
Target:  5'- cGGGCUGCUUCGaucauGGUcauuccUCCAGuGCg -3'
miRNA:   3'- aCUCGGCGAAGCgcu--UCA------AGGUCuUG- -5'
24086 5' -52.5 NC_005262.1 + 22358 0.66 0.866565
Target:  5'- aUGAuCCGCguggUGCGGAGggugUCCGGcGCg -3'
miRNA:   3'- -ACUcGGCGaa--GCGCUUCa---AGGUCuUG- -5'
24086 5' -52.5 NC_005262.1 + 50390 0.66 0.858259
Target:  5'- uUGuGCCcGCUcUCGCGGAGcUCguGGAUg -3'
miRNA:   3'- -ACuCGG-CGA-AGCGCUUCaAGguCUUG- -5'
24086 5' -52.5 NC_005262.1 + 52306 0.66 0.858259
Target:  5'- gGAGCUGCUgaccaaaGCGc---UCCGGAACa -3'
miRNA:   3'- aCUCGGCGAag-----CGCuucaAGGUCUUG- -5'
24086 5' -52.5 NC_005262.1 + 41291 0.66 0.847096
Target:  5'- gGAcuGCCGCUUCGCGAuccgcucgcgcgccAGcUUCAGcGCu -3'
miRNA:   3'- aCU--CGGCGAAGCGCU--------------UCaAGGUCuUG- -5'
24086 5' -52.5 NC_005262.1 + 48706 0.67 0.840921
Target:  5'- cGcGCCGCagaaagaCGCGucGUUCUGGGACa -3'
miRNA:   3'- aCuCGGCGaa-----GCGCuuCAAGGUCUUG- -5'
24086 5' -52.5 NC_005262.1 + 45792 0.67 0.831906
Target:  5'- aGGGCgGCggCGUGcuGaUCCAGGACc -3'
miRNA:   3'- aCUCGgCGaaGCGCuuCaAGGUCUUG- -5'
24086 5' -52.5 NC_005262.1 + 8267 0.67 0.822674
Target:  5'- --uGCUGCgUCGCGAAGUcgaguuUgCGGAACu -3'
miRNA:   3'- acuCGGCGaAGCGCUUCA------AgGUCUUG- -5'
24086 5' -52.5 NC_005262.1 + 52648 0.67 0.822674
Target:  5'- aGGGCCGCccgUGCGA----CCGGAGCc -3'
miRNA:   3'- aCUCGGCGaa-GCGCUucaaGGUCUUG- -5'
24086 5' -52.5 NC_005262.1 + 35455 0.67 0.822674
Target:  5'- uUGAGgCGCUgcaCGCGcacGGgcaUCCGGAACc -3'
miRNA:   3'- -ACUCgGCGAa--GCGCu--UCa--AGGUCUUG- -5'
24086 5' -52.5 NC_005262.1 + 6354 0.68 0.793777
Target:  5'- --cGCCGCggcaucCGCGGacGGUgCCGGAGCg -3'
miRNA:   3'- acuCGGCGaa----GCGCU--UCAaGGUCUUG- -5'
24086 5' -52.5 NC_005262.1 + 59550 0.68 0.783781
Target:  5'- aUGGGCCaCgaggagCGCGAGGagcacauccUCCAGAACa -3'
miRNA:   3'- -ACUCGGcGaa----GCGCUUCa--------AGGUCUUG- -5'
24086 5' -52.5 NC_005262.1 + 47259 0.68 0.773621
Target:  5'- gGAGCgGCUUCGCaucuucGGUgUCCGGggUc -3'
miRNA:   3'- aCUCGgCGAAGCGcu----UCA-AGGUCuuG- -5'
24086 5' -52.5 NC_005262.1 + 49601 0.68 0.742282
Target:  5'- aGuGCCGC---GUGGAGUUCCGGAu- -3'
miRNA:   3'- aCuCGGCGaagCGCUUCAAGGUCUug -5'
24086 5' -52.5 NC_005262.1 + 17463 0.71 0.587451
Target:  5'- cGAGga-CUUCGCcGAGUUCCAGGACg -3'
miRNA:   3'- aCUCggcGAAGCGcUUCAAGGUCUUG- -5'
24086 5' -52.5 NC_005262.1 + 42050 0.72 0.565301
Target:  5'- cGuGCCGCUgCGCGAucUUCCGuGAGCg -3'
miRNA:   3'- aCuCGGCGAaGCGCUucAAGGU-CUUG- -5'
24086 5' -52.5 NC_005262.1 + 59858 0.72 0.554306
Target:  5'- cGA-UCGCgUCGCGGAGUUCguGAGCc -3'
miRNA:   3'- aCUcGGCGaAGCGCUUCAAGguCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.