miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24087 5' -56.4 NC_005262.1 + 44898 0.66 0.673595
Target:  5'- gAGAAGGcCGUggUCGGgacuggauGCGGCGCAagGCg -3'
miRNA:   3'- gUCUUCC-GCG--AGCU--------CGUCGCGUagUG- -5'
24087 5' -56.4 NC_005262.1 + 44594 0.66 0.673595
Target:  5'- -cGAAGGguucgagauucCGCUCGAGCGcgagaagcccgcGCGCAagGCa -3'
miRNA:   3'- guCUUCC-----------GCGAGCUCGU------------CGCGUagUG- -5'
24087 5' -56.4 NC_005262.1 + 17308 0.66 0.662668
Target:  5'- gAGAAGGaggaagcagacCGCaagGAGCgcgAGCGCGUCGCg -3'
miRNA:   3'- gUCUUCC-----------GCGag-CUCG---UCGCGUAGUG- -5'
24087 5' -56.4 NC_005262.1 + 8196 0.66 0.661573
Target:  5'- cCGGAAGGCGC-CGcAGCGaugauccGCGCGggcCAUg -3'
miRNA:   3'- -GUCUUCCGCGaGC-UCGU-------CGCGUa--GUG- -5'
24087 5' -56.4 NC_005262.1 + 32889 0.66 0.651713
Target:  5'- aAGuuGGUGCcauccUCGAGCgcgAGCGgCGUCACc -3'
miRNA:   3'- gUCuuCCGCG-----AGCUCG---UCGC-GUAGUG- -5'
24087 5' -56.4 NC_005262.1 + 15122 0.66 0.651713
Target:  5'- -uGAAGGCGUggaauGCA-CGCAUCGCg -3'
miRNA:   3'- guCUUCCGCGagcu-CGUcGCGUAGUG- -5'
24087 5' -56.4 NC_005262.1 + 57748 0.66 0.651713
Target:  5'- --cAAGGCGCUCGAggGCAuugcGCGCAaUgGCg -3'
miRNA:   3'- gucUUCCGCGAGCU--CGU----CGCGU-AgUG- -5'
24087 5' -56.4 NC_005262.1 + 45397 0.66 0.651713
Target:  5'- --uGAGGCGCUCGGaagccGguGCGgGUCGu -3'
miRNA:   3'- gucUUCCGCGAGCU-----CguCGCgUAGUg -5'
24087 5' -56.4 NC_005262.1 + 48765 0.66 0.648422
Target:  5'- aGGucGGCGCgaacauGGCAGCGCAggacgugcgcgagcUCACg -3'
miRNA:   3'- gUCuuCCGCGagc---UCGUCGCGU--------------AGUG- -5'
24087 5' -56.4 NC_005262.1 + 38643 0.66 0.64074
Target:  5'- ---cAGGCGCccCGAGCAGaUGCGcCACa -3'
miRNA:   3'- gucuUCCGCGa-GCUCGUC-GCGUaGUG- -5'
24087 5' -56.4 NC_005262.1 + 26565 0.66 0.64074
Target:  5'- gCGGAAGGCGCgugUCGGGUucaGCAcgagCACa -3'
miRNA:   3'- -GUCUUCCGCG---AGCUCGucgCGUa---GUG- -5'
24087 5' -56.4 NC_005262.1 + 11542 0.66 0.64074
Target:  5'- ----cGGcCGCUCGccGGCugaAGUGCAUCACg -3'
miRNA:   3'- gucuuCC-GCGAGC--UCG---UCGCGUAGUG- -5'
24087 5' -56.4 NC_005262.1 + 13019 0.66 0.629759
Target:  5'- gCAGGAGcGCGCcaaGGGCuacgcgguGCGCGUCGa -3'
miRNA:   3'- -GUCUUC-CGCGag-CUCGu-------CGCGUAGUg -5'
24087 5' -56.4 NC_005262.1 + 29777 0.66 0.629759
Target:  5'- ----cGGCGCaCGAuGCGGCccgGCGUCACg -3'
miRNA:   3'- gucuuCCGCGaGCU-CGUCG---CGUAGUG- -5'
24087 5' -56.4 NC_005262.1 + 43342 0.66 0.629759
Target:  5'- aCAGgcGGCGaUCGAcGCGGCGaaggCGCa -3'
miRNA:   3'- -GUCuuCCGCgAGCU-CGUCGCgua-GUG- -5'
24087 5' -56.4 NC_005262.1 + 60174 0.66 0.629759
Target:  5'- -uGAAGGCGCUCGGcCAGUGgGcgGCa -3'
miRNA:   3'- guCUUCCGCGAGCUcGUCGCgUagUG- -5'
24087 5' -56.4 NC_005262.1 + 43244 0.66 0.629759
Target:  5'- ----uGGCGCUCGaAGCAGUaCGUCGu -3'
miRNA:   3'- gucuuCCGCGAGC-UCGUCGcGUAGUg -5'
24087 5' -56.4 NC_005262.1 + 14221 0.67 0.619877
Target:  5'- aCGGcGGGCGCgaugucgaccacgcaCGAGCAGgacgcaGCGUCGCc -3'
miRNA:   3'- -GUCuUCCGCGa--------------GCUCGUCg-----CGUAGUG- -5'
24087 5' -56.4 NC_005262.1 + 59258 0.67 0.61878
Target:  5'- uCAGcacGCGCagGAGCgaaacgAGCGCGUCGCg -3'
miRNA:   3'- -GUCuucCGCGagCUCG------UCGCGUAGUG- -5'
24087 5' -56.4 NC_005262.1 + 38846 0.67 0.607812
Target:  5'- aGGAAGGCa--CG-GCAGCGC-UCGCg -3'
miRNA:   3'- gUCUUCCGcgaGCuCGUCGCGuAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.