miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24087 5' -56.4 NC_005262.1 + 63 0.67 0.564241
Target:  5'- gGGGAGGCcgcgGCUCGcgaagaagucGGCcGCGCcgCACg -3'
miRNA:   3'- gUCUUCCG----CGAGC----------UCGuCGCGuaGUG- -5'
24087 5' -56.4 NC_005262.1 + 3827 0.76 0.184719
Target:  5'- aGGAAGGUGC-CGAGCGccccGCGCGUgACg -3'
miRNA:   3'- gUCUUCCGCGaGCUCGU----CGCGUAgUG- -5'
24087 5' -56.4 NC_005262.1 + 4735 0.76 0.184222
Target:  5'- gCAGgcGGUGCUCGAGCuccugccGGCGCcacggAUCACu -3'
miRNA:   3'- -GUCuuCCGCGAGCUCG-------UCGCG-----UAGUG- -5'
24087 5' -56.4 NC_005262.1 + 7521 0.67 0.58595
Target:  5'- cCAucGGGCagGUUCG-GCGGCGCGUCGg -3'
miRNA:   3'- -GUcuUCCG--CGAGCuCGUCGCGUAGUg -5'
24087 5' -56.4 NC_005262.1 + 8196 0.66 0.661573
Target:  5'- cCGGAAGGCGC-CGcAGCGaugauccGCGCGggcCAUg -3'
miRNA:   3'- -GUCUUCCGCGaGC-UCGU-------CGCGUa--GUG- -5'
24087 5' -56.4 NC_005262.1 + 8385 0.73 0.287682
Target:  5'- cCAGccGGCGCUCGAGCugcucgaugcGGCGC-UCGa -3'
miRNA:   3'- -GUCuuCCGCGAGCUCG----------UCGCGuAGUg -5'
24087 5' -56.4 NC_005262.1 + 9601 0.68 0.521535
Target:  5'- -cGcGGGCGCUgGAGCAcGCGC-UCGg -3'
miRNA:   3'- guCuUCCGCGAgCUCGU-CGCGuAGUg -5'
24087 5' -56.4 NC_005262.1 + 9683 0.68 0.511048
Target:  5'- -cGAGGGCGCcgUCGAcgucgaggcgcaGCAGCGgGUCGu -3'
miRNA:   3'- guCUUCCGCG--AGCU------------CGUCGCgUAGUg -5'
24087 5' -56.4 NC_005262.1 + 10345 0.72 0.317679
Target:  5'- --aAGGGCGCaucugucuacaUCGAGgGGCGCAUCAa -3'
miRNA:   3'- gucUUCCGCG-----------AGCUCgUCGCGUAGUg -5'
24087 5' -56.4 NC_005262.1 + 11542 0.66 0.64074
Target:  5'- ----cGGcCGCUCGccGGCugaAGUGCAUCACg -3'
miRNA:   3'- gucuuCC-GCGAGC--UCG---UCGCGUAGUG- -5'
24087 5' -56.4 NC_005262.1 + 13019 0.66 0.629759
Target:  5'- gCAGGAGcGCGCcaaGGGCuacgcgguGCGCGUCGa -3'
miRNA:   3'- -GUCUUC-CGCGag-CUCGu-------CGCGUAGUg -5'
24087 5' -56.4 NC_005262.1 + 14221 0.67 0.619877
Target:  5'- aCGGcGGGCGCgaugucgaccacgcaCGAGCAGgacgcaGCGUCGCc -3'
miRNA:   3'- -GUCuUCCGCGa--------------GCUCGUCg-----CGUAGUG- -5'
24087 5' -56.4 NC_005262.1 + 14560 0.72 0.325537
Target:  5'- uCGGcAGGCGuCUCGccGCGGCGC-UCACg -3'
miRNA:   3'- -GUCuUCCGC-GAGCu-CGUCGCGuAGUG- -5'
24087 5' -56.4 NC_005262.1 + 15045 0.67 0.595773
Target:  5'- uGGggGGUcgcccgaGUUCGAGCAG-GCAuggUCGCu -3'
miRNA:   3'- gUCuuCCG-------CGAGCUCGUCgCGU---AGUG- -5'
24087 5' -56.4 NC_005262.1 + 15122 0.66 0.651713
Target:  5'- -uGAAGGCGUggaauGCA-CGCAUCGCg -3'
miRNA:   3'- guCUUCCGCGagcu-CGUcGCGUAGUG- -5'
24087 5' -56.4 NC_005262.1 + 15586 0.71 0.384527
Target:  5'- -uGGAGGCGCgcgcgcgCGAGgAGCGCGU-GCg -3'
miRNA:   3'- guCUUCCGCGa------GCUCgUCGCGUAgUG- -5'
24087 5' -56.4 NC_005262.1 + 15671 0.67 0.575072
Target:  5'- uCGGAucGaCGC-CGAGCucuugcgcgcGGCGCGUCACa -3'
miRNA:   3'- -GUCUucC-GCGaGCUCG----------UCGCGUAGUG- -5'
24087 5' -56.4 NC_005262.1 + 15717 0.72 0.317679
Target:  5'- -cGucGGCGC-CGGGCGGCuCGUCGCg -3'
miRNA:   3'- guCuuCCGCGaGCUCGUCGcGUAGUG- -5'
24087 5' -56.4 NC_005262.1 + 16375 0.69 0.450178
Target:  5'- uGGuucuGGGCG-UCGAGCuugcuuuucuGCGCGUCGCg -3'
miRNA:   3'- gUCu---UCCGCgAGCUCGu---------CGCGUAGUG- -5'
24087 5' -56.4 NC_005262.1 + 17254 0.68 0.542749
Target:  5'- gAGGAGacGCGCcuguUCGAGCuGCGCGaCACc -3'
miRNA:   3'- gUCUUC--CGCG----AGCUCGuCGCGUaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.