miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24088 3' -54.8 NC_005262.1 + 43302 0.66 0.807864
Target:  5'- cGCGCCGaUGGUgCGCgCGAUUACgCAcucgccgcucUGCg -3'
miRNA:   3'- cUGCGGC-AUCA-GCG-GCUGAUG-GU----------ACG- -5'
24088 3' -54.8 NC_005262.1 + 783 0.66 0.807864
Target:  5'- cGAUGCCGUAcUgGCCGACaaaauCCAgGUa -3'
miRNA:   3'- -CUGCGGCAUcAgCGGCUGau---GGUaCG- -5'
24088 3' -54.8 NC_005262.1 + 10979 0.66 0.807864
Target:  5'- --aGCCGc--UCGCCGAgcgcCUGCCAcUGCg -3'
miRNA:   3'- cugCGGCaucAGCGGCU----GAUGGU-ACG- -5'
24088 3' -54.8 NC_005262.1 + 48021 0.66 0.807864
Target:  5'- -cCGCCGaagaugaggaAGUCGCCGGCcgGCagGUGCu -3'
miRNA:   3'- cuGCGGCa---------UCAGCGGCUGa-UGg-UACG- -5'
24088 3' -54.8 NC_005262.1 + 24573 0.66 0.798395
Target:  5'- cGCGUCc--GUCGCCGugUcGCgGUGCg -3'
miRNA:   3'- cUGCGGcauCAGCGGCugA-UGgUACG- -5'
24088 3' -54.8 NC_005262.1 + 33874 0.66 0.798395
Target:  5'- cGACGCCGcg--CGCgaGACgAUCGUGCg -3'
miRNA:   3'- -CUGCGGCaucaGCGg-CUGaUGGUACG- -5'
24088 3' -54.8 NC_005262.1 + 16477 0.66 0.798395
Target:  5'- aGCGCCGaaucGGUCGCCaGCUucaGCUuUGCc -3'
miRNA:   3'- cUGCGGCa---UCAGCGGcUGA---UGGuACG- -5'
24088 3' -54.8 NC_005262.1 + 4428 0.66 0.798395
Target:  5'- aGCGCCuggagcucGgcGUUGCCGGCgUACUuUGCg -3'
miRNA:   3'- cUGCGG--------CauCAGCGGCUG-AUGGuACG- -5'
24088 3' -54.8 NC_005262.1 + 48300 0.66 0.798395
Target:  5'- -uCGCCGgugagcgAGcCGCCGcGCUcgguguaagcGCCGUGCu -3'
miRNA:   3'- cuGCGGCa------UCaGCGGC-UGA----------UGGUACG- -5'
24088 3' -54.8 NC_005262.1 + 51370 0.66 0.792632
Target:  5'- cGCGCCGUccgcGaCGCCGGCcaaggccgcgccugACCGUGUg -3'
miRNA:   3'- cUGCGGCAu---CaGCGGCUGa-------------UGGUACG- -5'
24088 3' -54.8 NC_005262.1 + 33149 0.66 0.788757
Target:  5'- uGCGUCGUAagggcggcaccGUCGUCGAgaUGCCggGCa -3'
miRNA:   3'- cUGCGGCAU-----------CAGCGGCUg-AUGGuaCG- -5'
24088 3' -54.8 NC_005262.1 + 29151 0.66 0.788757
Target:  5'- cGAgGCCG-AGUgGCgCG-CgACCAUGCg -3'
miRNA:   3'- -CUgCGGCaUCAgCG-GCuGaUGGUACG- -5'
24088 3' -54.8 NC_005262.1 + 6865 0.66 0.788757
Target:  5'- --gGCCGUAGUCcUCGGCgaUGCCGgccGCg -3'
miRNA:   3'- cugCGGCAUCAGcGGCUG--AUGGUa--CG- -5'
24088 3' -54.8 NC_005262.1 + 22927 0.66 0.778958
Target:  5'- cGCGC-----UCGCCGAC-GCCAUGCu -3'
miRNA:   3'- cUGCGgcaucAGCGGCUGaUGGUACG- -5'
24088 3' -54.8 NC_005262.1 + 123 0.66 0.778958
Target:  5'- uGCGUCGUcgccGUCGCCGGCaauuCCA-GCc -3'
miRNA:   3'- cUGCGGCAu---CAGCGGCUGau--GGUaCG- -5'
24088 3' -54.8 NC_005262.1 + 63597 0.66 0.778958
Target:  5'- -cCGCCGccccCGCCGGCguggACCAUGa -3'
miRNA:   3'- cuGCGGCaucaGCGGCUGa---UGGUACg -5'
24088 3' -54.8 NC_005262.1 + 63327 0.66 0.778958
Target:  5'- cGCGCCGc-GUCGCCGAggucaacgccCUcaaggcggAUCAUGCg -3'
miRNA:   3'- cUGCGGCauCAGCGGCU----------GA--------UGGUACG- -5'
24088 3' -54.8 NC_005262.1 + 7645 0.66 0.778958
Target:  5'- cGACGCCGgcGgCGaCGGCUAUCuccGCg -3'
miRNA:   3'- -CUGCGGCauCaGCgGCUGAUGGua-CG- -5'
24088 3' -54.8 NC_005262.1 + 21505 0.66 0.778958
Target:  5'- aGACGCgCGagaacacGUCGCCGGUgcCCGUGCc -3'
miRNA:   3'- -CUGCG-GCau-----CAGCGGCUGauGGUACG- -5'
24088 3' -54.8 NC_005262.1 + 52582 0.66 0.778958
Target:  5'- --aGCCG-AGUCGgcgaCGACUACCGcGUa -3'
miRNA:   3'- cugCGGCaUCAGCg---GCUGAUGGUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.