miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24088 5' -50.5 NC_005262.1 + 44148 0.66 0.964457
Target:  5'- -gGCCGG-ACGCGcgcGCGAucgggcaggagcgcgGCGGCGAGc -3'
miRNA:   3'- gaUGGUCaUGUGC---UGCU---------------UGCCGUUCc -5'
24088 5' -50.5 NC_005262.1 + 676 0.66 0.963001
Target:  5'- cCUugCAGUcCGCGcACGucaccuCGGCGAGu -3'
miRNA:   3'- -GAugGUCAuGUGC-UGCuu----GCCGUUCc -5'
24088 5' -50.5 NC_005262.1 + 51314 0.66 0.963001
Target:  5'- -gACCAGauggGCGCauccGCGcGCGGCAAGa -3'
miRNA:   3'- gaUGGUCa---UGUGc---UGCuUGCCGUUCc -5'
24088 5' -50.5 NC_005262.1 + 50433 0.66 0.963001
Target:  5'- -gGCCGcGUGCACGuCGucgugcCGcGCGAGGa -3'
miRNA:   3'- gaUGGU-CAUGUGCuGCuu----GC-CGUUCC- -5'
24088 5' -50.5 NC_005262.1 + 17042 0.66 0.963001
Target:  5'- -cGCCuGUACGacCGGCGuGGCGGCGAu- -3'
miRNA:   3'- gaUGGuCAUGU--GCUGC-UUGCCGUUcc -5'
24088 5' -50.5 NC_005262.1 + 42103 0.66 0.96263
Target:  5'- uCUACCGGa--ACGGCGAaacguggAUGGCuuGGGa -3'
miRNA:   3'- -GAUGGUCaugUGCUGCU-------UGCCGu-UCC- -5'
24088 5' -50.5 NC_005262.1 + 49224 0.66 0.95918
Target:  5'- ---gCGGUGCGCGugaGCGccGCGGCGAGa -3'
miRNA:   3'- gaugGUCAUGUGC---UGCu-UGCCGUUCc -5'
24088 5' -50.5 NC_005262.1 + 25983 0.66 0.95918
Target:  5'- -cGCgCAGUACACGGCGGGCacguucGCGAc- -3'
miRNA:   3'- gaUG-GUCAUGUGCUGCUUGc-----CGUUcc -5'
24088 5' -50.5 NC_005262.1 + 45018 0.66 0.95918
Target:  5'- -cGCCAacACGCGGCaGAUGGCGAGc -3'
miRNA:   3'- gaUGGUcaUGUGCUGcUUGCCGUUCc -5'
24088 5' -50.5 NC_005262.1 + 31003 0.66 0.95918
Target:  5'- gCUACCAGUaccucaacccGCGCGAaguguuCGAGCGG-AAGu -3'
miRNA:   3'- -GAUGGUCA----------UGUGCU------GCUUGCCgUUCc -5'
24088 5' -50.5 NC_005262.1 + 8581 0.66 0.955096
Target:  5'- -gGCC--UGCGCGACGAagcgACGGCGGu- -3'
miRNA:   3'- gaUGGucAUGUGCUGCU----UGCCGUUcc -5'
24088 5' -50.5 NC_005262.1 + 22629 0.66 0.955096
Target:  5'- -gACCAGUACACcucccuCGAAaccUGGCAgAGGc -3'
miRNA:   3'- gaUGGUCAUGUGcu----GCUU---GCCGU-UCC- -5'
24088 5' -50.5 NC_005262.1 + 46149 0.66 0.952517
Target:  5'- gUACCAGcgGCGCcucaacgcgaucuccGACGcGACGGcCGAGGc -3'
miRNA:   3'- gAUGGUCa-UGUG---------------CUGC-UUGCC-GUUCC- -5'
24088 5' -50.5 NC_005262.1 + 56639 0.66 0.950744
Target:  5'- -gACCAuGUGgGgGAUGAACGcccGCAAGGc -3'
miRNA:   3'- gaUGGU-CAUgUgCUGCUUGC---CGUUCC- -5'
24088 5' -50.5 NC_005262.1 + 28883 0.66 0.950744
Target:  5'- aUGCUGGgacGCACGACGAACG-CAGu- -3'
miRNA:   3'- gAUGGUCa--UGUGCUGCUUGCcGUUcc -5'
24088 5' -50.5 NC_005262.1 + 45775 0.66 0.950744
Target:  5'- -gAUCGGcauCGCGGCGAAgGGCGGcGGc -3'
miRNA:   3'- gaUGGUCau-GUGCUGCUUgCCGUU-CC- -5'
24088 5' -50.5 NC_005262.1 + 24861 0.66 0.950744
Target:  5'- -cGCCAGUGCuCGGCGAugugcauccgcCGGCGcgugacAGGc -3'
miRNA:   3'- gaUGGUCAUGuGCUGCUu----------GCCGU------UCC- -5'
24088 5' -50.5 NC_005262.1 + 23399 0.66 0.946118
Target:  5'- -cGCCAcaAgGCGGCGAuGCGGCGGGc -3'
miRNA:   3'- gaUGGUcaUgUGCUGCU-UGCCGUUCc -5'
24088 5' -50.5 NC_005262.1 + 28400 0.66 0.946118
Target:  5'- -gACCcGa--ACGACGAGCGGCAcgugcucgAGGu -3'
miRNA:   3'- gaUGGuCaugUGCUGCUUGCCGU--------UCC- -5'
24088 5' -50.5 NC_005262.1 + 6564 0.66 0.946118
Target:  5'- uUGCC---GC-CGACGAGCGGCGcgaucAGGc -3'
miRNA:   3'- gAUGGucaUGuGCUGCUUGCCGU-----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.