miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24088 5' -50.5 NC_005262.1 + 56209 1.12 0.002939
Target:  5'- aCUACCAGUACACGACGAACGGCAAGGu -3'
miRNA:   3'- -GAUGGUCAUGUGCUGCUUGCCGUUCC- -5'
24088 5' -50.5 NC_005262.1 + 5125 0.81 0.274334
Target:  5'- cCUGCCA-UGCGCGACGGGCGGCGc-- -3'
miRNA:   3'- -GAUGGUcAUGUGCUGCUUGCCGUucc -5'
24088 5' -50.5 NC_005262.1 + 60185 0.79 0.34365
Target:  5'- -gGCCAGUGgGCGGCaacCGGCAAGGa -3'
miRNA:   3'- gaUGGUCAUgUGCUGcuuGCCGUUCC- -5'
24088 5' -50.5 NC_005262.1 + 22872 0.78 0.405725
Target:  5'- gCUcCCAcGUACugGAUG-ACGGCGAGGg -3'
miRNA:   3'- -GAuGGU-CAUGugCUGCuUGCCGUUCC- -5'
24088 5' -50.5 NC_005262.1 + 22123 0.76 0.495075
Target:  5'- aUGCCGGUGCcgGCGGCGAugACGGCGc-- -3'
miRNA:   3'- gAUGGUCAUG--UGCUGCU--UGCCGUucc -5'
24088 5' -50.5 NC_005262.1 + 30127 0.76 0.495075
Target:  5'- -gGCCGuGUACGCGGCGAcCaGCGAGGc -3'
miRNA:   3'- gaUGGU-CAUGUGCUGCUuGcCGUUCC- -5'
24088 5' -50.5 NC_005262.1 + 33678 0.76 0.516152
Target:  5'- -cGCCGcGUACACGGCcaaauuCGGCAAGGu -3'
miRNA:   3'- gaUGGU-CAUGUGCUGcuu---GCCGUUCC- -5'
24088 5' -50.5 NC_005262.1 + 21623 0.75 0.570265
Target:  5'- aCUGCCcggAGUGCgACGGCGA-CGGCGAcGGc -3'
miRNA:   3'- -GAUGG---UCAUG-UGCUGCUuGCCGUU-CC- -5'
24088 5' -50.5 NC_005262.1 + 21430 0.74 0.592326
Target:  5'- cCUGCCAGUuCACcucguucgagauGGCGGACGGUucGGa -3'
miRNA:   3'- -GAUGGUCAuGUG------------CUGCUUGCCGuuCC- -5'
24088 5' -50.5 NC_005262.1 + 55670 0.74 0.614523
Target:  5'- -cGCCGGU-CACGAacaCGAugGGCGAGc -3'
miRNA:   3'- gaUGGUCAuGUGCU---GCUugCCGUUCc -5'
24088 5' -50.5 NC_005262.1 + 38047 0.74 0.62565
Target:  5'- --uUCGGcauCACGACGAACGGCAcGGc -3'
miRNA:   3'- gauGGUCau-GUGCUGCUUGCCGUuCC- -5'
24088 5' -50.5 NC_005262.1 + 10993 0.73 0.63567
Target:  5'- -cGCCGGUcgcgcucGCACGGCuGACGaGCGAGGc -3'
miRNA:   3'- gaUGGUCA-------UGUGCUGcUUGC-CGUUCC- -5'
24088 5' -50.5 NC_005262.1 + 17087 0.73 0.647912
Target:  5'- -cGCCcGUcgACGCGGCGGGCcGCGAGGa -3'
miRNA:   3'- gaUGGuCA--UGUGCUGCUUGcCGUUCC- -5'
24088 5' -50.5 NC_005262.1 + 60625 0.73 0.659026
Target:  5'- -cGCCAuGcGCACGcugGCGAGCGGCGAGc -3'
miRNA:   3'- gaUGGU-CaUGUGC---UGCUUGCCGUUCc -5'
24088 5' -50.5 NC_005262.1 + 23702 0.73 0.670115
Target:  5'- uCUACCGGcGCACGGuCGAccacGCGGCGAu- -3'
miRNA:   3'- -GAUGGUCaUGUGCU-GCU----UGCCGUUcc -5'
24088 5' -50.5 NC_005262.1 + 63079 0.73 0.681166
Target:  5'- -gGCgAGUAUGCGGCG-GCGuGCAAGGc -3'
miRNA:   3'- gaUGgUCAUGUGCUGCuUGC-CGUUCC- -5'
24088 5' -50.5 NC_005262.1 + 53300 0.72 0.703115
Target:  5'- -cACCAGcaaggGCACGAUGGACaaGGCGAGc -3'
miRNA:   3'- gaUGGUCa----UGUGCUGCUUG--CCGUUCc -5'
24088 5' -50.5 NC_005262.1 + 30067 0.72 0.703115
Target:  5'- gCUGCCGGcgACgACGACGc-CGGCAAGa -3'
miRNA:   3'- -GAUGGUCa-UG-UGCUGCuuGCCGUUCc -5'
24088 5' -50.5 NC_005262.1 + 42249 0.72 0.712905
Target:  5'- aUGCCgAGcGCcgcgcucacugcgGCGACGAGCGGCAcGGg -3'
miRNA:   3'- gAUGG-UCaUG-------------UGCUGCUUGCCGUuCC- -5'
24088 5' -50.5 NC_005262.1 + 60130 0.71 0.746068
Target:  5'- -cGCCAGcguCGCGGCGAA-GGCAuGGg -3'
miRNA:   3'- gaUGGUCau-GUGCUGCUUgCCGUuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.