miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24088 5' -50.5 NC_005262.1 + 676 0.66 0.963001
Target:  5'- cCUugCAGUcCGCGcACGucaccuCGGCGAGu -3'
miRNA:   3'- -GAugGUCAuGUGC-UGCuu----GCCGUUCc -5'
24088 5' -50.5 NC_005262.1 + 2639 0.66 0.945641
Target:  5'- -gACCAGaucggcccaugccUGCGCGGCGccgGGCGGCGuccuGGc -3'
miRNA:   3'- gaUGGUC-------------AUGUGCUGC---UUGCCGUu---CC- -5'
24088 5' -50.5 NC_005262.1 + 5125 0.81 0.274334
Target:  5'- cCUGCCA-UGCGCGACGGGCGGCGc-- -3'
miRNA:   3'- -GAUGGUcAUGUGCUGCUUGCCGUucc -5'
24088 5' -50.5 NC_005262.1 + 6564 0.66 0.946118
Target:  5'- uUGCC---GC-CGACGAGCGGCGcgaucAGGc -3'
miRNA:   3'- gAUGGucaUGuGCUGCUUGCCGU-----UCC- -5'
24088 5' -50.5 NC_005262.1 + 6616 0.71 0.777085
Target:  5'- -aGCgGGaGCGacACGAGCGGCGAGGg -3'
miRNA:   3'- gaUGgUCaUGUgcUGCUUGCCGUUCC- -5'
24088 5' -50.5 NC_005262.1 + 8581 0.66 0.955096
Target:  5'- -gGCC--UGCGCGACGAagcgACGGCGGu- -3'
miRNA:   3'- gaUGGucAUGUGCUGCU----UGCCGUUcc -5'
24088 5' -50.5 NC_005262.1 + 9418 0.67 0.924824
Target:  5'- --cCCGGUACAcaagcCGGCGAGCGGguGc- -3'
miRNA:   3'- gauGGUCAUGU-----GCUGCUUGCCguUcc -5'
24088 5' -50.5 NC_005262.1 + 10448 0.68 0.912484
Target:  5'- -gAUCAGguuCGCG-CGGuCGGCGAGGu -3'
miRNA:   3'- gaUGGUCau-GUGCuGCUuGCCGUUCC- -5'
24088 5' -50.5 NC_005262.1 + 10460 0.69 0.87679
Target:  5'- -aGCCGGgcggaagcCGCGACGAcaGCGGCGAc- -3'
miRNA:   3'- gaUGGUCau------GUGCUGCU--UGCCGUUcc -5'
24088 5' -50.5 NC_005262.1 + 10993 0.73 0.63567
Target:  5'- -cGCCGGUcgcgcucGCACGGCuGACGaGCGAGGc -3'
miRNA:   3'- gaUGGUCA-------UGUGCUGcUUGC-CGUUCC- -5'
24088 5' -50.5 NC_005262.1 + 13036 0.69 0.860667
Target:  5'- gCUACgCGGUGCGCGuCGAgcuGCGGCc--- -3'
miRNA:   3'- -GAUG-GUCAUGUGCuGCU---UGCCGuucc -5'
24088 5' -50.5 NC_005262.1 + 14125 0.67 0.918795
Target:  5'- -cACCGGUACuuuuugaGugGGAUGGCGugcgccGGGa -3'
miRNA:   3'- gaUGGUCAUGug-----CugCUUGCCGU------UCC- -5'
24088 5' -50.5 NC_005262.1 + 14915 0.67 0.930009
Target:  5'- uUGCCGGU-CACGACGu-CGGaCAguugcgcGGGg -3'
miRNA:   3'- gAUGGUCAuGUGCUGCuuGCC-GU-------UCC- -5'
24088 5' -50.5 NC_005262.1 + 15291 0.68 0.896909
Target:  5'- gCUGCCAGUcgucgauucgccgcGCAUgGGCGGGCGGCc--- -3'
miRNA:   3'- -GAUGGUCA--------------UGUG-CUGCUUGCCGuucc -5'
24088 5' -50.5 NC_005262.1 + 17042 0.66 0.963001
Target:  5'- -cGCCuGUACGacCGGCGuGGCGGCGAu- -3'
miRNA:   3'- gaUGGuCAUGU--GCUGC-UUGCCGUUcc -5'
24088 5' -50.5 NC_005262.1 + 17087 0.73 0.647912
Target:  5'- -cGCCcGUcgACGCGGCGGGCcGCGAGGa -3'
miRNA:   3'- gaUGGuCA--UGUGCUGCUUGcCGUUCC- -5'
24088 5' -50.5 NC_005262.1 + 19495 0.7 0.797014
Target:  5'- -aACCcGcACugGAUGAACGGguAGGc -3'
miRNA:   3'- gaUGGuCaUGugCUGCUUGCCguUCC- -5'
24088 5' -50.5 NC_005262.1 + 20180 0.68 0.905892
Target:  5'- -cGCCGGUGC-CGGCGAGCGuCAc-- -3'
miRNA:   3'- gaUGGUCAUGuGCUGCUUGCcGUucc -5'
24088 5' -50.5 NC_005262.1 + 21430 0.74 0.592326
Target:  5'- cCUGCCAGUuCACcucguucgagauGGCGGACGGUucGGa -3'
miRNA:   3'- -GAUGGUCAuGUG------------CUGCUUGCCGuuCC- -5'
24088 5' -50.5 NC_005262.1 + 21545 0.67 0.941216
Target:  5'- -cGCCgcAGUgaGCGCGGCGcuCGGCAucGGa -3'
miRNA:   3'- gaUGG--UCA--UGUGCUGCuuGCCGUu-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.