miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24089 3' -59.9 NC_005262.1 + 17627 0.66 0.542926
Target:  5'- aGCAGCGCGAGcucgccgagcagcaGGCaGagAUCGcCCGCCa -3'
miRNA:   3'- -CGUCGCGCUCc-------------CCG-Cg-UAGUaGGCGG- -5'
24089 3' -59.9 NC_005262.1 + 15904 0.66 0.538828
Target:  5'- uGC-GCGCGAcGuGGCGCcgCgAUgCGCCg -3'
miRNA:   3'- -CGuCGCGCUcC-CCGCGuaG-UAgGCGG- -5'
24089 3' -59.9 NC_005262.1 + 62944 0.66 0.538828
Target:  5'- -gAGCGCGAuuuGcGCGCGUCGcuUCCgGCCg -3'
miRNA:   3'- cgUCGCGCUcc-C-CGCGUAGU--AGG-CGG- -5'
24089 3' -59.9 NC_005262.1 + 52767 0.66 0.538828
Target:  5'- uGCuGCGCGcGGucuuGCGCGaCAgCCGCCu -3'
miRNA:   3'- -CGuCGCGCuCCc---CGCGUaGUaGGCGG- -5'
24089 3' -59.9 NC_005262.1 + 17359 0.66 0.538828
Target:  5'- cCGGCGCGGGcGGCGCggCGggCC-CCu -3'
miRNA:   3'- cGUCGCGCUCcCCGCGuaGUa-GGcGG- -5'
24089 3' -59.9 NC_005262.1 + 1073 0.66 0.528633
Target:  5'- cCAGCGCGccgaucAGGGuGCGUgcgcgauuacccAUCGUCgCGCUc -3'
miRNA:   3'- cGUCGCGC------UCCC-CGCG------------UAGUAG-GCGG- -5'
24089 3' -59.9 NC_005262.1 + 19611 0.66 0.528633
Target:  5'- uCGGUGCGAGuGGCGgucggCGUCCaGCCc -3'
miRNA:   3'- cGUCGCGCUCcCCGCgua--GUAGG-CGG- -5'
24089 3' -59.9 NC_005262.1 + 23666 0.66 0.527617
Target:  5'- uGCAGCGCGAgcgucguacuuucGGGaucaaGCGCAgCAgcgagaaCGCCa -3'
miRNA:   3'- -CGUCGCGCU-------------CCC-----CGCGUaGUag-----GCGG- -5'
24089 3' -59.9 NC_005262.1 + 10799 0.66 0.52255
Target:  5'- uGCuGCGCGAGcugccGcgacgaucacgaccaGCGCAUgcgCGUCCGCCg -3'
miRNA:   3'- -CGuCGCGCUCc----C---------------CGCGUA---GUAGGCGG- -5'
24089 3' -59.9 NC_005262.1 + 33027 0.66 0.51851
Target:  5'- aGCcGCGCGAGGcgaGGUagGCAUCAcgaucggCgGCCg -3'
miRNA:   3'- -CGuCGCGCUCC---CCG--CGUAGUa------GgCGG- -5'
24089 3' -59.9 NC_005262.1 + 57002 0.66 0.51851
Target:  5'- -aAGCGCGAcgaguucucGGGCGCGaucuUCAaCCGCUu -3'
miRNA:   3'- cgUCGCGCUc--------CCCGCGU----AGUaGGCGG- -5'
24089 3' -59.9 NC_005262.1 + 15695 0.66 0.514482
Target:  5'- cGCGGCGCGucacaucaucGCGCGUCGg-CGCCg -3'
miRNA:   3'- -CGUCGCGCuccc------CGCGUAGUagGCGG- -5'
24089 3' -59.9 NC_005262.1 + 30827 0.66 0.508464
Target:  5'- cGguGCGCGucucGGcgacGCGCAUCGUCgaCGUCg -3'
miRNA:   3'- -CguCGCGCu---CCc---CGCGUAGUAG--GCGG- -5'
24089 3' -59.9 NC_005262.1 + 41160 0.66 0.508464
Target:  5'- uGCAGCGCGcgcAGGaGG-GCA-CcgCCGCg -3'
miRNA:   3'- -CGUCGCGC---UCC-CCgCGUaGuaGGCGg -5'
24089 3' -59.9 NC_005262.1 + 7536 0.66 0.508464
Target:  5'- gGCGGCGCGucGGcGCGCucgacgaCAUCCuucCCg -3'
miRNA:   3'- -CGUCGCGCucCC-CGCGua-----GUAGGc--GG- -5'
24089 3' -59.9 NC_005262.1 + 100 0.66 0.508464
Target:  5'- uGCAGCGCGGucaaucgacGGauUGCGUCGU-CGCCg -3'
miRNA:   3'- -CGUCGCGCU---------CCccGCGUAGUAgGCGG- -5'
24089 3' -59.9 NC_005262.1 + 19395 0.66 0.508464
Target:  5'- uGCGGCGCGcGGGuG-GUAUCccUCgCGCCu -3'
miRNA:   3'- -CGUCGCGCuCCC-CgCGUAGu-AG-GCGG- -5'
24089 3' -59.9 NC_005262.1 + 12336 0.66 0.498502
Target:  5'- cGCAGCGCGcGGcGGCaGCAUUgaaggaAUaCgGCCu -3'
miRNA:   3'- -CGUCGCGCuCC-CCG-CGUAG------UA-GgCGG- -5'
24089 3' -59.9 NC_005262.1 + 59227 0.66 0.498502
Target:  5'- aGCAGCGCcgccgcuGGCGCGagAUgCGCCg -3'
miRNA:   3'- -CGUCGCGcucc---CCGCGUagUAgGCGG- -5'
24089 3' -59.9 NC_005262.1 + 6049 0.66 0.498502
Target:  5'- uGCGGCaCGAuaccgcaccacGGGGuUGCGUCAggCCGCg -3'
miRNA:   3'- -CGUCGcGCU-----------CCCC-GCGUAGUa-GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.