miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24089 5' -56 NC_005262.1 + 63163 0.66 0.723166
Target:  5'- cGAACAAGCgcugcuggggcguguGGGUGCGCcagaagcaGCGCu -3'
miRNA:   3'- uCUUGUUCG---------------UCCACGCGuagg----CGCGc -5'
24089 5' -56 NC_005262.1 + 36214 0.66 0.718935
Target:  5'- cGAGCGgauuGGCAGGcuucuCGCG-CUGCGCGg -3'
miRNA:   3'- uCUUGU----UCGUCCac---GCGUaGGCGCGC- -5'
24089 5' -56 NC_005262.1 + 14931 0.66 0.718935
Target:  5'- cGGACAGuugcGCGGG-GUGCGUCCaGCGg- -3'
miRNA:   3'- uCUUGUU----CGUCCaCGCGUAGG-CGCgc -5'
24089 5' -56 NC_005262.1 + 15703 0.66 0.708299
Target:  5'- cGGACGAGCAGcGcuaUGCGCucgacgUgGCGCGc -3'
miRNA:   3'- uCUUGUUCGUC-C---ACGCGua----GgCGCGC- -5'
24089 5' -56 NC_005262.1 + 5187 0.66 0.69759
Target:  5'- --cGCGGGCGcGG-GCGCggCCGgCGCGa -3'
miRNA:   3'- ucuUGUUCGU-CCaCGCGuaGGC-GCGC- -5'
24089 5' -56 NC_005262.1 + 2134 0.66 0.69759
Target:  5'- uGGAGCGuucuGCGuugugcaucGGUcaGCGCAUCaGCGCGg -3'
miRNA:   3'- -UCUUGUu---CGU---------CCA--CGCGUAGgCGCGC- -5'
24089 5' -56 NC_005262.1 + 12149 0.66 0.69759
Target:  5'- gAGAGcCAGGUuucgaaccugaAGGccGCGCuGUCUGCGCGg -3'
miRNA:   3'- -UCUU-GUUCG-----------UCCa-CGCG-UAGGCGCGC- -5'
24089 5' -56 NC_005262.1 + 8949 0.66 0.686818
Target:  5'- -uGACGAGCcGGUcgGCGCG-CUGCGUGu -3'
miRNA:   3'- ucUUGUUCGuCCA--CGCGUaGGCGCGC- -5'
24089 5' -56 NC_005262.1 + 51673 0.66 0.680329
Target:  5'- cGAcuACAAGCAGccggcgaucgacacuGUgaGCGCGUUCGUGCGc -3'
miRNA:   3'- uCU--UGUUCGUC---------------CA--CGCGUAGGCGCGC- -5'
24089 5' -56 NC_005262.1 + 39633 0.66 0.675994
Target:  5'- gGGAACGuGCAGGcgUGCGCcUCCuGcCGCc -3'
miRNA:   3'- -UCUUGUuCGUCC--ACGCGuAGG-C-GCGc -5'
24089 5' -56 NC_005262.1 + 63532 0.66 0.675994
Target:  5'- -cGGCAcucAGCGcGUGUaCGUCCGCGCGa -3'
miRNA:   3'- ucUUGU---UCGUcCACGcGUAGGCGCGC- -5'
24089 5' -56 NC_005262.1 + 5318 0.66 0.675994
Target:  5'- cGGAGCuggccGGCAGGaGCuucGCA-CCGCGCu -3'
miRNA:   3'- -UCUUGu----UCGUCCaCG---CGUaGGCGCGc -5'
24089 5' -56 NC_005262.1 + 49618 0.66 0.66513
Target:  5'- cGGAugGAGCGGcuUGcCGCAcuccUCgGCGCGg -3'
miRNA:   3'- -UCUugUUCGUCc-AC-GCGU----AGgCGCGC- -5'
24089 5' -56 NC_005262.1 + 11425 0.66 0.66513
Target:  5'- cGGGCc-GCcgaAGGUGCGCGacacgCCGCGCc -3'
miRNA:   3'- uCUUGuuCG---UCCACGCGUa----GGCGCGc -5'
24089 5' -56 NC_005262.1 + 51180 0.66 0.66513
Target:  5'- cGAGCAaugcGGCgAGGgaggGCGCGcucaUCCGCGaCGc -3'
miRNA:   3'- uCUUGU----UCG-UCCa---CGCGU----AGGCGC-GC- -5'
24089 5' -56 NC_005262.1 + 61949 0.66 0.66513
Target:  5'- cGAcCAAGCAGGcaaccgcaUGCGCAgcCUGCgGCGa -3'
miRNA:   3'- uCUuGUUCGUCC--------ACGCGUa-GGCG-CGC- -5'
24089 5' -56 NC_005262.1 + 43855 0.67 0.654235
Target:  5'- cGGuGCGccGGCAGGaccucgGCGCGaUCGCGCGc -3'
miRNA:   3'- -UCuUGU--UCGUCCa-----CGCGUaGGCGCGC- -5'
24089 5' -56 NC_005262.1 + 36728 0.67 0.654235
Target:  5'- gGGGGCuGGCGccgcGG-GCGCAguUCUGCGCa -3'
miRNA:   3'- -UCUUGuUCGU----CCaCGCGU--AGGCGCGc -5'
24089 5' -56 NC_005262.1 + 9671 0.67 0.64332
Target:  5'- cGAGCGAGUAGGcgaggGCGCcgUCGaCGuCGa -3'
miRNA:   3'- uCUUGUUCGUCCa----CGCGuaGGC-GC-GC- -5'
24089 5' -56 NC_005262.1 + 15576 0.67 0.632394
Target:  5'- cAGGAgGAGCuGGagGCGCG-CgCGCGCGn -3'
miRNA:   3'- -UCUUgUUCGuCCa-CGCGUaG-GCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.