miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24090 3' -54.9 NC_005262.1 + 13455 0.66 0.756812
Target:  5'- gUCGUC--GCGGGCgCUUCGuccugcGCGGCGGg -3'
miRNA:   3'- aAGUAGcuUGUCCG-GGAGU------UGCCGCU- -5'
24090 3' -54.9 NC_005262.1 + 4318 0.66 0.753712
Target:  5'- aUCGUCGAcuacggcgagccucGCGGGCCgUCcauCGGCc- -3'
miRNA:   3'- aAGUAGCU--------------UGUCCGGgAGuu-GCCGcu -5'
24090 3' -54.9 NC_005262.1 + 45306 0.66 0.746434
Target:  5'- aUCGUCGGccaAGGCUa-CAACGGCGc -3'
miRNA:   3'- aAGUAGCUug-UCCGGgaGUUGCCGCu -5'
24090 3' -54.9 NC_005262.1 + 62768 0.66 0.746434
Target:  5'- aUUGUCGAACGccacGG-CCUCAAgauCGGCGAc -3'
miRNA:   3'- aAGUAGCUUGU----CCgGGAGUU---GCCGCU- -5'
24090 3' -54.9 NC_005262.1 + 35684 0.66 0.74015
Target:  5'- -aCGUCGAGCGGGCacggaagcauccgcuCCggCGuCGGCGGg -3'
miRNA:   3'- aaGUAGCUUGUCCG---------------GGa-GUuGCCGCU- -5'
24090 3' -54.9 NC_005262.1 + 11849 0.66 0.735939
Target:  5'- -gCAUUGAACuggacGGCCCcgCuguCGGCGAc -3'
miRNA:   3'- aaGUAGCUUGu----CCGGGa-Guu-GCCGCU- -5'
24090 3' -54.9 NC_005262.1 + 17187 0.66 0.72534
Target:  5'- -gCGUCGGGCGGGaUCUguggCGucuGCGGCGAg -3'
miRNA:   3'- aaGUAGCUUGUCC-GGGa---GU---UGCCGCU- -5'
24090 3' -54.9 NC_005262.1 + 46407 0.67 0.714646
Target:  5'- cUCGUCGGGCuGGGCCCgcaagguccgCAGgGGCc- -3'
miRNA:   3'- aAGUAGCUUG-UCCGGGa---------GUUgCCGcu -5'
24090 3' -54.9 NC_005262.1 + 49085 0.67 0.714646
Target:  5'- ----cCGAGCAGGCCgUuaCGAUGGCGc -3'
miRNA:   3'- aaguaGCUUGUCCGGgA--GUUGCCGCu -5'
24090 3' -54.9 NC_005262.1 + 35896 0.67 0.714646
Target:  5'- -aCGUCGGACAGGUaCUUgagGAgGGCGGu -3'
miRNA:   3'- aaGUAGCUUGUCCGgGAG---UUgCCGCU- -5'
24090 3' -54.9 NC_005262.1 + 52803 0.67 0.693026
Target:  5'- cUUCAagGAuucgcagugGCAGGCgCUCGGCGaGCGGc -3'
miRNA:   3'- -AAGUagCU---------UGUCCGgGAGUUGC-CGCU- -5'
24090 3' -54.9 NC_005262.1 + 15192 0.67 0.682122
Target:  5'- cUCGUCGAgcugcgauuGCAGGCCga-GGCGGCu- -3'
miRNA:   3'- aAGUAGCU---------UGUCCGGgagUUGCCGcu -5'
24090 3' -54.9 NC_005262.1 + 33898 0.67 0.682122
Target:  5'- -gCGUCGGccgGC-GGCCCgaucggUAGCGGCGGu -3'
miRNA:   3'- aaGUAGCU---UGuCCGGGa-----GUUGCCGCU- -5'
24090 3' -54.9 NC_005262.1 + 6876 0.67 0.671169
Target:  5'- cUUC-UCGAGCGcGGCCuugauCUCGcCGGCGAg -3'
miRNA:   3'- -AAGuAGCUUGU-CCGG-----GAGUuGCCGCU- -5'
24090 3' -54.9 NC_005262.1 + 11935 0.67 0.671169
Target:  5'- aUCGUCGGgaACAuGGCgCacgcgcuggggaUCGACGGCGAu -3'
miRNA:   3'- aAGUAGCU--UGU-CCGgG------------AGUUGCCGCU- -5'
24090 3' -54.9 NC_005262.1 + 51648 0.67 0.66018
Target:  5'- cUUCAgguUCGAAaccuGGCUCUCcagcGCGGCGAu -3'
miRNA:   3'- -AAGU---AGCUUgu--CCGGGAGu---UGCCGCU- -5'
24090 3' -54.9 NC_005262.1 + 57306 0.68 0.631511
Target:  5'- aUCGUCGAGCggguugcgaacuucuGGGCCCgcgUCGAugcCGGCGu -3'
miRNA:   3'- aAGUAGCUUG---------------UCCGGG---AGUU---GCCGCu -5'
24090 3' -54.9 NC_005262.1 + 8569 0.68 0.605046
Target:  5'- aUUGUUGAGCGcGGCCUgcgcgacgaagCGACGGCGGu -3'
miRNA:   3'- aAGUAGCUUGU-CCGGGa----------GUUGCCGCU- -5'
24090 3' -54.9 NC_005262.1 + 13810 0.68 0.603945
Target:  5'- cUUCAUCGGcgggaGCGGGCgccgcugUCUCGuCGGCGAu -3'
miRNA:   3'- -AAGUAGCU-----UGUCCG-------GGAGUuGCCGCU- -5'
24090 3' -54.9 NC_005262.1 + 54329 0.69 0.594051
Target:  5'- gUCAUCGAcgcGCucGGCaCCUCGAucuacgaggaccCGGCGAa -3'
miRNA:   3'- aAGUAGCU---UGu-CCG-GGAGUU------------GCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.