Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24090 | 5' | -58.9 | NC_005262.1 | + | 52409 | 0.66 | 0.601163 |
Target: 5'- --aCGCUGGAGG-CGaucgCgGAGGCGc -3' miRNA: 3'- cgaGCGACCUCCuGCaca-GgCUCCGC- -5' |
|||||||
24090 | 5' | -58.9 | NC_005262.1 | + | 12934 | 0.66 | 0.59067 |
Target: 5'- cGCggcgCGCUGaAGGGCGUG-CgCGAcGGCa -3' miRNA: 3'- -CGa---GCGACcUCCUGCACaG-GCU-CCGc -5' |
|||||||
24090 | 5' | -58.9 | NC_005262.1 | + | 29990 | 0.66 | 0.59067 |
Target: 5'- cCUCGUccUGGAGGACGuUGcCCGc-GCGa -3' miRNA: 3'- cGAGCG--ACCUCCUGC-ACaGGCucCGC- -5' |
|||||||
24090 | 5' | -58.9 | NC_005262.1 | + | 59483 | 0.67 | 0.528633 |
Target: 5'- gGCUCGCcguagucgacgaUGaGGGGcGCGUGaUUGAGGCGg -3' miRNA: 3'- -CGAGCG------------AC-CUCC-UGCACaGGCUCCGC- -5' |
|||||||
24090 | 5' | -58.9 | NC_005262.1 | + | 24904 | 0.69 | 0.404398 |
Target: 5'- aGCUCggccaGCcGGAGGACG---CCGAGGCa -3' miRNA: 3'- -CGAG-----CGaCCUCCUGCacaGGCUCCGc -5' |
|||||||
24090 | 5' | -58.9 | NC_005262.1 | + | 56709 | 1.1 | 0.000519 |
Target: 5'- cGCUCGCUGGAGGACGUGUCCGAGGCGu -3' miRNA: 3'- -CGAGCGACCUCCUGCACAGGCUCCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home