Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 24091 | 3' | -61.6 | NC_005262.1 | + | 11010 | 0.77 | 0.075788 |
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Target: 5'- cGGCUGACGagCGAgGCGGCUGucGCGCa -3' miRNA: 3'- uCCGGCUGCa-GCU-CGCCGACcuCGCG- -5' |
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| 24091 | 3' | -61.6 | NC_005262.1 | + | 24977 | 0.78 | 0.064339 |
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Target: 5'- cAGGCCGGCuugGUCGAgGCGGCauucGAGCGCg -3' miRNA: 3'- -UCCGGCUG---CAGCU-CGCCGac--CUCGCG- -5' |
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| 24091 | 3' | -61.6 | NC_005262.1 | + | 35230 | 0.78 | 0.067957 |
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Target: 5'- gAGGUCGGCGgcgCGAucggcaGCGGCUGG-GCGCc -3' miRNA: 3'- -UCCGGCUGCa--GCU------CGCCGACCuCGCG- -5' |
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| 24091 | 3' | -61.6 | NC_005262.1 | + | 15146 | 0.79 | 0.054569 |
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Target: 5'- cGGCCGGCGUCGAGuCGGCgcggauguUGGAcggcacgcaGCGCu -3' miRNA: 3'- uCCGGCUGCAGCUC-GCCG--------ACCU---------CGCG- -5' |
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| 24091 | 3' | -61.6 | NC_005262.1 | + | 40460 | 0.79 | 0.05926 |
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Target: 5'- cGGCCGugGUCGAGCGcguGCUcGuGCGCg -3' miRNA: 3'- uCCGGCugCAGCUCGC---CGAcCuCGCG- -5' |
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| 24091 | 3' | -61.6 | NC_005262.1 | + | 28366 | 0.8 | 0.048738 |
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Target: 5'- cGaGCCGACGUCGAacacgaacacgucGCcgGGCUGGAGCGUg -3' miRNA: 3'- uC-CGGCUGCAGCU-------------CG--CCGACCUCGCG- -5' |
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| 24091 | 3' | -61.6 | NC_005262.1 | + | 58633 | 0.83 | 0.030492 |
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Target: 5'- cAGGCuCGGCaGUCGAGCGGCcGGGcGCGCg -3' miRNA: 3'- -UCCG-GCUG-CAGCUCGCCGaCCU-CGCG- -5' |
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| 24091 | 3' | -61.6 | NC_005262.1 | + | 56802 | 1.1 | 0.00029 |
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Target: 5'- aAGGCCGACGUCGAGCGGCUGGAGCGCc -3' miRNA: 3'- -UCCGGCUGCAGCUCGCCGACCUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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