miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 17263 0.71 0.216941
Target:  5'- cGGCCGGCGcCGcGCugGGCUGcuGCGCg -3'
miRNA:   3'- uCCGGCUGCaGCuCG--CCGACcuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 17338 0.71 0.201194
Target:  5'- uGGCCGGCGcggcauUCGGGUccGGCgcgGGcGGCGCg -3'
miRNA:   3'- uCCGGCUGC------AGCUCG--CCGa--CC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 12428 0.71 0.216941
Target:  5'- uGGCCGGCGUCGcggacggcGCGGUgccGAGCuGCa -3'
miRNA:   3'- uCCGGCUGCAGCu-------CGCCGac-CUCG-CG- -5'
24091 3' -61.6 NC_005262.1 + 14059 0.71 0.228016
Target:  5'- -cGCCGGCGUCGGuGCGGCUucGGcCGCc -3'
miRNA:   3'- ucCGGCUGCAGCU-CGCCGAccUC-GCG- -5'
24091 3' -61.6 NC_005262.1 + 57481 0.71 0.201194
Target:  5'- gGGcGCCGACGagaGGCGGCcgGcGAGCGCa -3'
miRNA:   3'- -UC-CGGCUGCagcUCGCCGa-C-CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 18106 0.71 0.228016
Target:  5'- cGGCCGGCGUCGAcaauUGGgaGGguaucgacgaAGCGCu -3'
miRNA:   3'- uCCGGCUGCAGCUc---GCCgaCC----------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 47147 0.71 0.206329
Target:  5'- aAGGUCGACG-CGAcCGGCgaGGcGCGCa -3'
miRNA:   3'- -UCCGGCUGCaGCUcGCCGa-CCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 43837 0.71 0.211578
Target:  5'- cGGGCCGGcCG-CGcGCGGC-GGuGCGCc -3'
miRNA:   3'- -UCCGGCU-GCaGCuCGCCGaCCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 24138 0.71 0.227451
Target:  5'- cGGgUGACGUucgaggaUGGGCGGCaGGAGgCGCa -3'
miRNA:   3'- uCCgGCUGCA-------GCUCGCCGaCCUC-GCG- -5'
24091 3' -61.6 NC_005262.1 + 47564 0.71 0.227451
Target:  5'- aAGG-CGACGUCGcccgacgaagcgaAGCGGCUGGcuuucAGCGa -3'
miRNA:   3'- -UCCgGCUGCAGC-------------UCGCCGACC-----UCGCg -5'
24091 3' -61.6 NC_005262.1 + 17594 0.71 0.228016
Target:  5'- -aGCUGGCGgCGcAGCGcgcggaGCUGGAGCGCc -3'
miRNA:   3'- ucCGGCUGCaGC-UCGC------CGACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 12616 0.7 0.239567
Target:  5'- cGGGCCGccGCGUCGu-CGGCUGccugcuGCGCg -3'
miRNA:   3'- -UCCGGC--UGCAGCucGCCGACcu----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 4829 0.7 0.257803
Target:  5'- gAGGCCGcCGgCGGcCGGCUGGuucgacugcuGCGCg -3'
miRNA:   3'- -UCCGGCuGCaGCUcGCCGACCu---------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 44980 0.7 0.233732
Target:  5'- aGGGCCGACGUgcagcagucCGcGCGGCaGGcGGCGg -3'
miRNA:   3'- -UCCGGCUGCA---------GCuCGCCGaCC-UCGCg -5'
24091 3' -61.6 NC_005262.1 + 52389 0.7 0.263491
Target:  5'- cGGcCCGGCG-CGGcGCGGCuucggcgUGGAGcCGCg -3'
miRNA:   3'- uCC-GGCUGCaGCU-CGCCG-------ACCUC-GCG- -5'
24091 3' -61.6 NC_005262.1 + 5892 0.7 0.233732
Target:  5'- --aUCGACGUCGAuGUcgGGCgGGAGCGCc -3'
miRNA:   3'- uccGGCUGCAGCU-CG--CCGaCCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 50794 0.7 0.251601
Target:  5'- -aGCCGAagguCGcCGAG-GGCaUGGAGCGCu -3'
miRNA:   3'- ucCGGCU----GCaGCUCgCCG-ACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 59143 0.7 0.264129
Target:  5'- cGGGCCG-CGUCGccGCGcGCaUGGAGgaCGCg -3'
miRNA:   3'- -UCCGGCuGCAGCu-CGC-CG-ACCUC--GCG- -5'
24091 3' -61.6 NC_005262.1 + 10877 0.7 0.251601
Target:  5'- cAGGCCGuCGuagaUCGAGCGgaucacgcccucGCUGGuguaguGCGCg -3'
miRNA:   3'- -UCCGGCuGC----AGCUCGC------------CGACCu-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 51834 0.69 0.297657
Target:  5'- cGGCCGACGU-GcGCGaaguGCUGaAGCGCg -3'
miRNA:   3'- uCCGGCUGCAgCuCGC----CGACcUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.