miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 56758 0.69 0.270581
Target:  5'- -cGCUGGCGUCGGGCGac--GAGCGCu -3'
miRNA:   3'- ucCGGCUGCAGCUCGCcgacCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 52819 0.69 0.277159
Target:  5'- uGGCaGGCGcucggCGAGCGGCUGaaggcuGCGCu -3'
miRNA:   3'- uCCGgCUGCa----GCUCGCCGACcu----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 27971 0.69 0.283188
Target:  5'- aAGGCCGGCaUUG-GCuGGCUGGAaucgcagGUGCa -3'
miRNA:   3'- -UCCGGCUGcAGCuCG-CCGACCU-------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 6609 0.69 0.283864
Target:  5'- cGGGUCGAgCGggagcgacaCGAGCGGCgaGGGGuCGCc -3'
miRNA:   3'- -UCCGGCU-GCa--------GCUCGCCGa-CCUC-GCG- -5'
24091 3' -61.6 NC_005262.1 + 17290 0.69 0.283864
Target:  5'- cGGGCaggGGCGUC--GCGGUcGGAGUGCu -3'
miRNA:   3'- -UCCGg--CUGCAGcuCGCCGaCCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 206 0.69 0.283864
Target:  5'- -cGCCGGCGg-GGGCGGC-GGAGC-Ca -3'
miRNA:   3'- ucCGGCUGCagCUCGCCGaCCUCGcG- -5'
24091 3' -61.6 NC_005262.1 + 44147 0.69 0.283864
Target:  5'- cGGCCgGACGcgCGcGCgaucgGGCaGGAGCGCg -3'
miRNA:   3'- uCCGG-CUGCa-GCuCG-----CCGaCCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 30438 0.69 0.283864
Target:  5'- cGGCCGGCGgguugUCGAucgGCGGCacGGugccGCGCa -3'
miRNA:   3'- uCCGGCUGC-----AGCU---CGCCGa-CCu---CGCG- -5'
24091 3' -61.6 NC_005262.1 + 5045 0.69 0.297657
Target:  5'- cGGCCGGCGccugaUCGGcgggcaggcccGCGGC-GGcGGCGCg -3'
miRNA:   3'- uCCGGCUGC-----AGCU-----------CGCCGaCC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 51834 0.69 0.297657
Target:  5'- cGGCCGACGU-GcGCGaaguGCUGaAGCGCg -3'
miRNA:   3'- uCCGGCUGCAgCuCGC----CGACcUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 60391 0.68 0.311965
Target:  5'- cGGCCGcaagauCGUCG-GCGGCau-GGCGCa -3'
miRNA:   3'- uCCGGCu-----GCAGCuCGCCGaccUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 21431 0.68 0.311965
Target:  5'- cGGCCGACGUCc-GCGaGCUGGucgaguucCGCc -3'
miRNA:   3'- uCCGGCUGCAGcuCGC-CGACCuc------GCG- -5'
24091 3' -61.6 NC_005262.1 + 34030 0.68 0.329815
Target:  5'- cGGCaCuACGcCGGGCGGUUgaggcggguuagccgGGAGCGCc -3'
miRNA:   3'- uCCG-GcUGCaGCUCGCCGA---------------CCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 14238 0.68 0.334394
Target:  5'- cGGCCu-CGUUcuGCGcgaccuGCUGGAGCGCg -3'
miRNA:   3'- uCCGGcuGCAGcuCGC------CGACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 9594 0.68 0.334394
Target:  5'- cGGCUcGCG-CGGGC-GCUGGAGCacGCg -3'
miRNA:   3'- uCCGGcUGCaGCUCGcCGACCUCG--CG- -5'
24091 3' -61.6 NC_005262.1 + 13792 0.68 0.334394
Target:  5'- cGGUgGGCGcCGGcGCGGCUucaucggcgGGAGCGg -3'
miRNA:   3'- uCCGgCUGCaGCU-CGCCGA---------CCUCGCg -5'
24091 3' -61.6 NC_005262.1 + 15717 0.68 0.342128
Target:  5'- -cGUCGGCGcCGGGCGGCUcgucgcGGcaGGUGCg -3'
miRNA:   3'- ucCGGCUGCaGCUCGCCGA------CC--UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 53456 0.68 0.345257
Target:  5'- cGGcGCCGGCGUCGAggacaacggcgugaaGUGGCUcGGcacggccgaAGUGCa -3'
miRNA:   3'- -UC-CGGCUGCAGCU---------------CGCCGA-CC---------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 13693 0.68 0.349198
Target:  5'- cGGCCGGCuucuguUCGcGCGGCgcgGGuucggucGGCGCa -3'
miRNA:   3'- uCCGGCUGc-----AGCuCGCCGa--CC-------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 9364 0.68 0.34999
Target:  5'- cGGUCGGCG-CGcGCGGC-GGccuGCGCc -3'
miRNA:   3'- uCCGGCUGCaGCuCGCCGaCCu--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.