miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 38554 0.68 0.34999
Target:  5'- aGGaGCCGGCGUUGcgcGCGGUUcGGGCGg -3'
miRNA:   3'- -UC-CGGCUGCAGCu--CGCCGAcCUCGCg -5'
24091 3' -61.6 NC_005262.1 + 9364 0.68 0.34999
Target:  5'- cGGUCGGCG-CGcGCGGC-GGccuGCGCc -3'
miRNA:   3'- uCCGGCUGCaGCuCGCCGaCCu--CGCG- -5'
24091 3' -61.6 NC_005262.1 + 18889 0.68 0.352374
Target:  5'- -cGCCG-UGUCGAugaacuggucuugcaGCGGCUGGAacacauccuuguaGCGCu -3'
miRNA:   3'- ucCGGCuGCAGCU---------------CGCCGACCU-------------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 61430 0.68 0.357176
Target:  5'- cGGCCGAggaauuccaCGUCGcgaagaaGGCGGCggacGGcgaAGCGCu -3'
miRNA:   3'- uCCGGCU---------GCAGC-------UCGCCGa---CC---UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 23355 0.68 0.35798
Target:  5'- cGGCCGGCGUgaagcgCGcGGCGGCgaaGGcccgcaacgugaAGCGCc -3'
miRNA:   3'- uCCGGCUGCA------GC-UCGCCGa--CC------------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 61148 0.68 0.35798
Target:  5'- uGGCgcagcagaucgCGGCGgCGGGCGaGCUGacGGGCGCg -3'
miRNA:   3'- uCCG-----------GCUGCaGCUCGC-CGAC--CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 11055 0.68 0.35798
Target:  5'- cAGGCCGcaGCGUcgccugagccCGAGCGGCcaaaGGGCGg -3'
miRNA:   3'- -UCCGGC--UGCA----------GCUCGCCGac--CUCGCg -5'
24091 3' -61.6 NC_005262.1 + 43343 0.68 0.35798
Target:  5'- cAGG-CGGCGaUCGAcGCGGCgaaGGCGCa -3'
miRNA:   3'- -UCCgGCUGC-AGCU-CGCCGaccUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 12170 0.67 0.374341
Target:  5'- aAGGCCGcGCuGUCuGcGCGGCaGGAGCa- -3'
miRNA:   3'- -UCCGGC-UG-CAG-CuCGCCGaCCUCGcg -5'
24091 3' -61.6 NC_005262.1 + 29033 0.67 0.374341
Target:  5'- -cGCCGAgcUCGAGCGGCgccGGcacgacGCGCa -3'
miRNA:   3'- ucCGGCUgcAGCUCGCCGa--CCu-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 52452 0.67 0.382708
Target:  5'- cGuGCCGcGCG-CGAGCGGCgucuugcggaGGAGgGCc -3'
miRNA:   3'- uC-CGGC-UGCaGCUCGCCGa---------CCUCgCG- -5'
24091 3' -61.6 NC_005262.1 + 55402 0.67 0.382708
Target:  5'- gAGcGCCG-CaUCGAGCaGCUcGAGCGCc -3'
miRNA:   3'- -UC-CGGCuGcAGCUCGcCGAcCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 28859 0.67 0.382708
Target:  5'- cAGGUCGGCGgcgucacggaCGAGauGCUGGGaCGCa -3'
miRNA:   3'- -UCCGGCUGCa---------GCUCgcCGACCUcGCG- -5'
24091 3' -61.6 NC_005262.1 + 31818 0.67 0.391199
Target:  5'- gGGGCCauGAUGUCG-GUcGCUGcGAGCGa -3'
miRNA:   3'- -UCCGG--CUGCAGCuCGcCGAC-CUCGCg -5'
24091 3' -61.6 NC_005262.1 + 37765 0.67 0.391199
Target:  5'- -cGCCG-CGgCGAGCuGCUGG-GCGUa -3'
miRNA:   3'- ucCGGCuGCaGCUCGcCGACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 10461 0.67 0.391199
Target:  5'- cGGUCGGCGagGuAGCGGCgc--GCGCg -3'
miRNA:   3'- uCCGGCUGCagC-UCGCCGaccuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 2257 0.67 0.391199
Target:  5'- cGGGCCG-CGUCGAuGaCGGCcc--GCGCa -3'
miRNA:   3'- -UCCGGCuGCAGCU-C-GCCGaccuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 57330 0.67 0.391199
Target:  5'- uGGGCCcGCGUCGAuGcCGGCgucucgccGGAGC-Cg -3'
miRNA:   3'- -UCCGGcUGCAGCU-C-GCCGa-------CCUCGcG- -5'
24091 3' -61.6 NC_005262.1 + 40724 0.67 0.399813
Target:  5'- cGGcGCUGACGcccUCGAGCacgGGC-GGcGGCGCg -3'
miRNA:   3'- -UC-CGGCUGC---AGCUCG---CCGaCC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 27856 0.67 0.403292
Target:  5'- -uGCCG-CGUCGcaaggacggcggcaaGGCGGCc-GAGCGCa -3'
miRNA:   3'- ucCGGCuGCAGC---------------UCGCCGacCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.