Results 81 - 100 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 36307 | 0.67 | 0.408546 |
Target: 5'- cGGUCGACuUCGgugGGgGGCcGGuGCGCu -3' miRNA: 3'- uCCGGCUGcAGC---UCgCCGaCCuCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 40963 | 0.67 | 0.408546 |
Target: 5'- cAGGCugucgaacaaCGGCGUCGGGUuucuGGC-GGcGGCGCu -3' miRNA: 3'- -UCCG----------GCUGCAGCUCG----CCGaCC-UCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 40237 | 0.67 | 0.408546 |
Target: 5'- -cGCCcGCGcgcggCGGGCGGUUGGucagucuGCGCg -3' miRNA: 3'- ucCGGcUGCa----GCUCGCCGACCu------CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 33174 | 0.67 | 0.408546 |
Target: 5'- -uGCCGAgCGUCGgcGGCGGCUcGAucuucGCGCc -3' miRNA: 3'- ucCGGCU-GCAGC--UCGCCGAcCU-----CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 5293 | 0.66 | 0.417398 |
Target: 5'- uGGUCGAUcacgcgGUCGAgGCGGUcGGAGCu- -3' miRNA: 3'- uCCGGCUG------CAGCU-CGCCGaCCUCGcg -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 8387 | 0.66 | 0.417398 |
Target: 5'- -aGCCGGCGcUCGAGCuGCUcGAugcgGCGCu -3' miRNA: 3'- ucCGGCUGC-AGCUCGcCGAcCU----CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 17399 | 0.66 | 0.417398 |
Target: 5'- cGGCCGACaauGcCGAGaC-GCUGG-GCGCc -3' miRNA: 3'- uCCGGCUG---CaGCUC-GcCGACCuCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 60960 | 0.66 | 0.420971 |
Target: 5'- cGGGCacgccagcgcgcaaaCGAgGUCGAgGCGcaGgUGGAGCGCc -3' miRNA: 3'- -UCCG---------------GCUgCAGCU-CGC--CgACCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 39586 | 0.66 | 0.425464 |
Target: 5'- cGuGCCGGCGcagCGucGCGGCUGccgccucGGGCGUg -3' miRNA: 3'- uC-CGGCUGCa--GCu-CGCCGAC-------CUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 17081 | 0.66 | 0.426365 |
Target: 5'- uAGGCgCGccCGUCGAcGCGGC-GGGcCGCg -3' miRNA: 3'- -UCCG-GCu-GCAGCU-CGCCGaCCUcGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 3619 | 0.66 | 0.426365 |
Target: 5'- cAGGCUGuACa-CGAGguccauCGGCUGGGcGCGCa -3' miRNA: 3'- -UCCGGC-UGcaGCUC------GCCGACCU-CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 9134 | 0.66 | 0.426365 |
Target: 5'- gAGGaCCGGCGcCGGGcCGGUcGGAaUGCg -3' miRNA: 3'- -UCC-GGCUGCaGCUC-GCCGaCCUcGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 49395 | 0.66 | 0.43271 |
Target: 5'- -cGCgGGCGUCGcaacuggucuguucGGCGGCaUGGGcgaccGCGCa -3' miRNA: 3'- ucCGgCUGCAGC--------------UCGCCG-ACCU-----CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 24327 | 0.66 | 0.434534 |
Target: 5'- uGGUCGGCGcgaUCGAcauGCGGCUcugcgucGGcGCGCc -3' miRNA: 3'- uCCGGCUGC---AGCU---CGCCGA-------CCuCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 24908 | 0.66 | 0.435447 |
Target: 5'- cGGCCagccggagGACGcCGAGgcaUGGCgGGAuGCGCa -3' miRNA: 3'- uCCGG--------CUGCaGCUC---GCCGaCCU-CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 62668 | 0.66 | 0.435447 |
Target: 5'- gGGGUgGGuuuaGUCcgcccGGCGGCggcaggGGAGCGCg -3' miRNA: 3'- -UCCGgCUg---CAGc----UCGCCGa-----CCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 2463 | 0.66 | 0.444638 |
Target: 5'- cGGUgGACGUUGAGCaugcGCgUGGugccGCGCu -3' miRNA: 3'- uCCGgCUGCAGCUCGc---CG-ACCu---CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 12805 | 0.66 | 0.444638 |
Target: 5'- uGGgCGGCG-CGcAGcCGGCgcgugaagaaGGAGCGCg -3' miRNA: 3'- uCCgGCUGCaGC-UC-GCCGa---------CCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 59607 | 0.66 | 0.444638 |
Target: 5'- cAGGCCGugGUCGuG-GGCgagaaGAaccucGCGCg -3' miRNA: 3'- -UCCGGCugCAGCuCgCCGac---CU-----CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 17222 | 0.66 | 0.444638 |
Target: 5'- cGGcGCUGGCGUCGuggucgucgugGGCGucGCgGGAGCGg -3' miRNA: 3'- -UC-CGGCUGCAGC-----------UCGC--CGaCCUCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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