Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24091 | 3' | -61.6 | NC_005262.1 | + | 43285 | 0.66 | 0.453938 |
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Target: 5'- gAGGUCGuCG-CGAGCGccgcGCcgaUGGuGCGCg -3' miRNA: 3'- -UCCGGCuGCaGCUCGC----CG---ACCuCGCG- -5' |
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| 24091 | 3' | -61.6 | NC_005262.1 | + | 58914 | 0.66 | 0.453938 |
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Target: 5'- cAGGCCGGCGgccCGAccgauggcGCGcGCUucucGGucGGCGCg -3' miRNA: 3'- -UCCGGCUGCa--GCU--------CGC-CGA----CC--UCGCG- -5' |
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| 24091 | 3' | -61.6 | NC_005262.1 | + | 51277 | 0.66 | 0.463342 |
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Target: 5'- gAGGCgaucGCGUCGcGCGGCaucUGaAGCGCg -3' miRNA: 3'- -UCCGgc--UGCAGCuCGCCG---ACcUCGCG- -5' |
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| 24091 | 3' | -61.6 | NC_005262.1 | + | 53713 | 0.66 | 0.463342 |
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Target: 5'- cGGCCG-CGUCGAa-GGCcGuGGCGCu -3' miRNA: 3'- uCCGGCuGCAGCUcgCCGaCcUCGCG- -5' |
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| 24091 | 3' | -61.6 | NC_005262.1 | + | 56165 | 0.66 | 0.463342 |
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Target: 5'- -cGCCGGCGUCGAcauuCGGCcaacguccGGuaAGCGCg -3' miRNA: 3'- ucCGGCUGCAGCUc---GCCGa-------CC--UCGCG- -5' |
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| 24091 | 3' | -61.6 | NC_005262.1 | + | 26542 | 0.66 | 0.463342 |
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Target: 5'- cGGCCGuuGuUCGuGCGGUUcacgcGGAagGCGCg -3' miRNA: 3'- uCCGGCugC-AGCuCGCCGA-----CCU--CGCG- -5' |
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| 24091 | 3' | -61.6 | NC_005262.1 | + | 38047 | 0.66 | 0.463342 |
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Target: 5'- cGGGCCG----UGAGCGGCUugccGGccuGCGCg -3' miRNA: 3'- -UCCGGCugcaGCUCGCCGA----CCu--CGCG- -5' |
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| 24091 | 3' | -61.6 | NC_005262.1 | + | 60343 | 0.66 | 0.463342 |
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Target: 5'- gAGGUCGACGggcgguUCGAGCuGauccccGAGCGCg -3' miRNA: 3'- -UCCGGCUGC------AGCUCGcCgac---CUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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