Results 61 - 80 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24091 | 3' | -61.6 | NC_005262.1 | + | 206 | 0.69 | 0.283864 |
Target: 5'- -cGCCGGCGg-GGGCGGC-GGAGC-Ca -3' miRNA: 3'- ucCGGCUGCagCUCGCCGaCCUCGcG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 30438 | 0.69 | 0.283864 |
Target: 5'- cGGCCGGCGgguugUCGAucgGCGGCacGGugccGCGCa -3' miRNA: 3'- uCCGGCUGC-----AGCU---CGCCGa-CCu---CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 6609 | 0.69 | 0.283864 |
Target: 5'- cGGGUCGAgCGggagcgacaCGAGCGGCgaGGGGuCGCc -3' miRNA: 3'- -UCCGGCU-GCa--------GCUCGCCGa-CCUC-GCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 17290 | 0.69 | 0.283864 |
Target: 5'- cGGGCaggGGCGUC--GCGGUcGGAGUGCu -3' miRNA: 3'- -UCCGg--CUGCAGcuCGCCGaCCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 44147 | 0.69 | 0.283864 |
Target: 5'- cGGCCgGACGcgCGcGCgaucgGGCaGGAGCGCg -3' miRNA: 3'- uCCGG-CUGCa-GCuCG-----CCGaCCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 27971 | 0.69 | 0.283188 |
Target: 5'- aAGGCCGGCaUUG-GCuGGCUGGAaucgcagGUGCa -3' miRNA: 3'- -UCCGGCUGcAGCuCG-CCGACCU-------CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 52819 | 0.69 | 0.277159 |
Target: 5'- uGGCaGGCGcucggCGAGCGGCUGaaggcuGCGCu -3' miRNA: 3'- uCCGgCUGCa----GCUCGCCGACcu----CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 30746 | 0.69 | 0.270581 |
Target: 5'- aGGGCCcgcuuaguacGACGUCGGGCGGUacGucagcaucaGGCGCa -3' miRNA: 3'- -UCCGG----------CUGCAGCUCGCCGacC---------UCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 56758 | 0.69 | 0.270581 |
Target: 5'- -cGCUGGCGUCGGGCGac--GAGCGCu -3' miRNA: 3'- ucCGGCUGCAGCUCGCcgacCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 59143 | 0.7 | 0.264129 |
Target: 5'- cGGGCCG-CGUCGccGCGcGCaUGGAGgaCGCg -3' miRNA: 3'- -UCCGGCuGCAGCu-CGC-CG-ACCUC--GCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 52389 | 0.7 | 0.263491 |
Target: 5'- cGGcCCGGCG-CGGcGCGGCuucggcgUGGAGcCGCg -3' miRNA: 3'- uCC-GGCUGCaGCU-CGCCG-------ACCUC-GCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 4829 | 0.7 | 0.257803 |
Target: 5'- gAGGCCGcCGgCGGcCGGCUGGuucgacugcuGCGCg -3' miRNA: 3'- -UCCGGCuGCaGCUcGCCGACCu---------CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 10877 | 0.7 | 0.251601 |
Target: 5'- cAGGCCGuCGuagaUCGAGCGgaucacgcccucGCUGGuguaguGCGCg -3' miRNA: 3'- -UCCGGCuGC----AGCUCGC------------CGACCu-----CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 50794 | 0.7 | 0.251601 |
Target: 5'- -aGCCGAagguCGcCGAG-GGCaUGGAGCGCu -3' miRNA: 3'- ucCGGCU----GCaGCUCgCCG-ACCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 12616 | 0.7 | 0.239567 |
Target: 5'- cGGGCCGccGCGUCGu-CGGCUGccugcuGCGCg -3' miRNA: 3'- -UCCGGC--UGCAGCucGCCGACcu----CGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 5892 | 0.7 | 0.233732 |
Target: 5'- --aUCGACGUCGAuGUcgGGCgGGAGCGCc -3' miRNA: 3'- uccGGCUGCAGCU-CG--CCGaCCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 44980 | 0.7 | 0.233732 |
Target: 5'- aGGGCCGACGUgcagcagucCGcGCGGCaGGcGGCGg -3' miRNA: 3'- -UCCGGCUGCA---------GCuCGCCGaCC-UCGCg -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 18106 | 0.71 | 0.228016 |
Target: 5'- cGGCCGGCGUCGAcaauUGGgaGGguaucgacgaAGCGCu -3' miRNA: 3'- uCCGGCUGCAGCUc---GCCgaCC----------UCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 17594 | 0.71 | 0.228016 |
Target: 5'- -aGCUGGCGgCGcAGCGcgcggaGCUGGAGCGCc -3' miRNA: 3'- ucCGGCUGCaGC-UCGC------CGACCUCGCG- -5' |
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24091 | 3' | -61.6 | NC_005262.1 | + | 14059 | 0.71 | 0.228016 |
Target: 5'- -cGCCGGCGUCGGuGCGGCUucGGcCGCc -3' miRNA: 3'- ucCGGCUGCAGCU-CGCCGAccUC-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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