miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 35230 0.78 0.067957
Target:  5'- gAGGUCGGCGgcgCGAucggcaGCGGCUGG-GCGCc -3'
miRNA:   3'- -UCCGGCUGCa--GCU------CGCCGACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 36307 0.67 0.408546
Target:  5'- cGGUCGACuUCGgugGGgGGCcGGuGCGCu -3'
miRNA:   3'- uCCGGCUGcAGC---UCgCCGaCCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 37765 0.67 0.391199
Target:  5'- -cGCCG-CGgCGAGCuGCUGG-GCGUa -3'
miRNA:   3'- ucCGGCuGCaGCUCGcCGACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 38047 0.66 0.463342
Target:  5'- cGGGCCG----UGAGCGGCUugccGGccuGCGCg -3'
miRNA:   3'- -UCCGGCugcaGCUCGCCGA----CCu--CGCG- -5'
24091 3' -61.6 NC_005262.1 + 38554 0.68 0.34999
Target:  5'- aGGaGCCGGCGUUGcgcGCGGUUcGGGCGg -3'
miRNA:   3'- -UC-CGGCUGCAGCu--CGCCGAcCUCGCg -5'
24091 3' -61.6 NC_005262.1 + 39586 0.66 0.425464
Target:  5'- cGuGCCGGCGcagCGucGCGGCUGccgccucGGGCGUg -3'
miRNA:   3'- uC-CGGCUGCa--GCu-CGCCGAC-------CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 40237 0.67 0.408546
Target:  5'- -cGCCcGCGcgcggCGGGCGGUUGGucagucuGCGCg -3'
miRNA:   3'- ucCGGcUGCa----GCUCGCCGACCu------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 40460 0.79 0.05926
Target:  5'- cGGCCGugGUCGAGCGcguGCUcGuGCGCg -3'
miRNA:   3'- uCCGGCugCAGCUCGC---CGAcCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 40724 0.67 0.399813
Target:  5'- cGGcGCUGACGcccUCGAGCacgGGC-GGcGGCGCg -3'
miRNA:   3'- -UC-CGGCUGC---AGCUCG---CCGaCC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 40963 0.67 0.408546
Target:  5'- cAGGCugucgaacaaCGGCGUCGGGUuucuGGC-GGcGGCGCu -3'
miRNA:   3'- -UCCG----------GCUGCAGCUCG----CCGaCC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 41564 0.76 0.099051
Target:  5'- cGGCCGGCGU-GGGCGGCgcgGccgugagcuugucGAGCGCg -3'
miRNA:   3'- uCCGGCUGCAgCUCGCCGa--C-------------CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 43285 0.66 0.453938
Target:  5'- gAGGUCGuCG-CGAGCGccgcGCcgaUGGuGCGCg -3'
miRNA:   3'- -UCCGGCuGCaGCUCGC----CG---ACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 43343 0.68 0.35798
Target:  5'- cAGG-CGGCGaUCGAcGCGGCgaaGGCGCa -3'
miRNA:   3'- -UCCgGCUGC-AGCU-CGCCGaccUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 43694 0.68 0.34999
Target:  5'- cGGGCCGAauUCGcGCGGCgac-GCGCu -3'
miRNA:   3'- -UCCGGCUgcAGCuCGCCGaccuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 43837 0.71 0.211578
Target:  5'- cGGGCCGGcCG-CGcGCGGC-GGuGCGCc -3'
miRNA:   3'- -UCCGGCU-GCaGCuCGCCGaCCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 44147 0.69 0.283864
Target:  5'- cGGCCgGACGcgCGcGCgaucgGGCaGGAGCGCg -3'
miRNA:   3'- uCCGG-CUGCa-GCuCG-----CCGaCCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 44901 0.75 0.116591
Target:  5'- aAGGCCGugGUCGGgacuggauGCGGCgcaaGGCGCu -3'
miRNA:   3'- -UCCGGCugCAGCU--------CGCCGacc-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 44980 0.7 0.233732
Target:  5'- aGGGCCGACGUgcagcagucCGcGCGGCaGGcGGCGg -3'
miRNA:   3'- -UCCGGCUGCA---------GCuCGCCGaCC-UCGCg -5'
24091 3' -61.6 NC_005262.1 + 47147 0.71 0.206329
Target:  5'- aAGGUCGACG-CGAcCGGCgaGGcGCGCa -3'
miRNA:   3'- -UCCGGCUGCaGCUcGCCGa-CCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 47564 0.71 0.227451
Target:  5'- aAGG-CGACGUCGcccgacgaagcgaAGCGGCUGGcuuucAGCGa -3'
miRNA:   3'- -UCCgGCUGCAGC-------------UCGCCGACC-----UCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.