miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 49395 0.66 0.43271
Target:  5'- -cGCgGGCGUCGcaacuggucuguucGGCGGCaUGGGcgaccGCGCa -3'
miRNA:   3'- ucCGgCUGCAGC--------------UCGCCG-ACCU-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 50794 0.7 0.251601
Target:  5'- -aGCCGAagguCGcCGAG-GGCaUGGAGCGCu -3'
miRNA:   3'- ucCGGCU----GCaGCUCgCCG-ACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 51184 0.72 0.177156
Target:  5'- -aGCCGACGaCGcGGCGGCccgcUGGAGcCGCg -3'
miRNA:   3'- ucCGGCUGCaGC-UCGCCG----ACCUC-GCG- -5'
24091 3' -61.6 NC_005262.1 + 51277 0.66 0.463342
Target:  5'- gAGGCgaucGCGUCGcGCGGCaucUGaAGCGCg -3'
miRNA:   3'- -UCCGgc--UGCAGCuCGCCG---ACcUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 51834 0.69 0.297657
Target:  5'- cGGCCGACGU-GcGCGaaguGCUGaAGCGCg -3'
miRNA:   3'- uCCGGCUGCAgCuCGC----CGACcUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 52389 0.7 0.263491
Target:  5'- cGGcCCGGCG-CGGcGCGGCuucggcgUGGAGcCGCg -3'
miRNA:   3'- uCC-GGCUGCaGCU-CGCCG-------ACCUC-GCG- -5'
24091 3' -61.6 NC_005262.1 + 52452 0.67 0.382708
Target:  5'- cGuGCCGcGCG-CGAGCGGCgucuugcggaGGAGgGCc -3'
miRNA:   3'- uC-CGGC-UGCaGCUCGCCGa---------CCUCgCG- -5'
24091 3' -61.6 NC_005262.1 + 52708 0.74 0.131691
Target:  5'- cGGCCGACGcCGGacgaggccgcgcuGCugacgaaguucacgGGCUGGGGCGCc -3'
miRNA:   3'- uCCGGCUGCaGCU-------------CG--------------CCGACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 52819 0.69 0.277159
Target:  5'- uGGCaGGCGcucggCGAGCGGCUGaaggcuGCGCu -3'
miRNA:   3'- uCCGgCUGCa----GCUCGCCGACcu----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 53456 0.68 0.345257
Target:  5'- cGGcGCCGGCGUCGAggacaacggcgugaaGUGGCUcGGcacggccgaAGUGCa -3'
miRNA:   3'- -UC-CGGCUGCAGCU---------------CGCCGA-CC---------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 53713 0.66 0.463342
Target:  5'- cGGCCG-CGUCGAa-GGCcGuGGCGCu -3'
miRNA:   3'- uCCGGCuGCAGCUcgCCGaCcUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 55402 0.67 0.382708
Target:  5'- gAGcGCCG-CaUCGAGCaGCUcGAGCGCc -3'
miRNA:   3'- -UC-CGGCuGcAGCUCGcCGAcCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 56165 0.66 0.463342
Target:  5'- -cGCCGGCGUCGAcauuCGGCcaacguccGGuaAGCGCg -3'
miRNA:   3'- ucCGGCUGCAGCUc---GCCGa-------CC--UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 56539 0.72 0.186449
Target:  5'- cGGCaucCGUCGAGCaGCgcgaGGGGCGCa -3'
miRNA:   3'- uCCGgcuGCAGCUCGcCGa---CCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 56758 0.69 0.270581
Target:  5'- -cGCUGGCGUCGGGCGac--GAGCGCu -3'
miRNA:   3'- ucCGGCUGCAGCUCGCcgacCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 56802 1.1 0.00029
Target:  5'- aAGGCCGACGUCGAGCGGCUGGAGCGCc -3'
miRNA:   3'- -UCCGGCUGCAGCUCGCCGACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 57330 0.67 0.391199
Target:  5'- uGGGCCcGCGUCGAuGcCGGCgucucgccGGAGC-Cg -3'
miRNA:   3'- -UCCGGcUGCAGCU-C-GCCGa-------CCUCGcG- -5'
24091 3' -61.6 NC_005262.1 + 57481 0.71 0.201194
Target:  5'- gGGcGCCGACGagaGGCGGCcgGcGAGCGCa -3'
miRNA:   3'- -UC-CGGCUGCagcUCGCCGa-C-CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 58633 0.83 0.030492
Target:  5'- cAGGCuCGGCaGUCGAGCGGCcGGGcGCGCg -3'
miRNA:   3'- -UCCG-GCUG-CAGCUCGCCGaCCU-CGCG- -5'
24091 3' -61.6 NC_005262.1 + 58914 0.66 0.453938
Target:  5'- cAGGCCGGCGgccCGAccgauggcGCGcGCUucucGGucGGCGCg -3'
miRNA:   3'- -UCCGGCUGCa--GCU--------CGC-CGA----CC--UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.