miRNA display CGI


Results 41 - 60 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 40460 0.79 0.05926
Target:  5'- cGGCCGugGUCGAGCGcguGCUcGuGCGCg -3'
miRNA:   3'- uCCGGCugCAGCUCGC---CGAcCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 40237 0.67 0.408546
Target:  5'- -cGCCcGCGcgcggCGGGCGGUUGGucagucuGCGCg -3'
miRNA:   3'- ucCGGcUGCa----GCUCGCCGACCu------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 39586 0.66 0.425464
Target:  5'- cGuGCCGGCGcagCGucGCGGCUGccgccucGGGCGUg -3'
miRNA:   3'- uC-CGGCUGCa--GCu-CGCCGAC-------CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 38554 0.68 0.34999
Target:  5'- aGGaGCCGGCGUUGcgcGCGGUUcGGGCGg -3'
miRNA:   3'- -UC-CGGCUGCAGCu--CGCCGAcCUCGCg -5'
24091 3' -61.6 NC_005262.1 + 38047 0.66 0.463342
Target:  5'- cGGGCCG----UGAGCGGCUugccGGccuGCGCg -3'
miRNA:   3'- -UCCGGCugcaGCUCGCCGA----CCu--CGCG- -5'
24091 3' -61.6 NC_005262.1 + 37765 0.67 0.391199
Target:  5'- -cGCCG-CGgCGAGCuGCUGG-GCGUa -3'
miRNA:   3'- ucCGGCuGCaGCUCGcCGACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 36307 0.67 0.408546
Target:  5'- cGGUCGACuUCGgugGGgGGCcGGuGCGCu -3'
miRNA:   3'- uCCGGCUGcAGC---UCgCCGaCCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 35230 0.78 0.067957
Target:  5'- gAGGUCGGCGgcgCGAucggcaGCGGCUGG-GCGCc -3'
miRNA:   3'- -UCCGGCUGCa--GCU------CGCCGACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 34030 0.68 0.329815
Target:  5'- cGGCaCuACGcCGGGCGGUUgaggcggguuagccgGGAGCGCc -3'
miRNA:   3'- uCCG-GcUGCaGCUCGCCGA---------------CCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 33965 0.74 0.143991
Target:  5'- cGGaacgCGGCGUCGAGCuGCUGGAcgucGUGCg -3'
miRNA:   3'- uCCg---GCUGCAGCUCGcCGACCU----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 33174 0.67 0.408546
Target:  5'- -uGCCGAgCGUCGgcGGCGGCUcGAucuucGCGCc -3'
miRNA:   3'- ucCGGCU-GCAGC--UCGCCGAcCU-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 31818 0.67 0.391199
Target:  5'- gGGGCCauGAUGUCG-GUcGCUGcGAGCGa -3'
miRNA:   3'- -UCCGG--CUGCAGCuCGcCGAC-CUCGCg -5'
24091 3' -61.6 NC_005262.1 + 30991 0.77 0.075788
Target:  5'- gAGGCCGACGUCGAacGCgauGGCcGGcGCGCc -3'
miRNA:   3'- -UCCGGCUGCAGCU--CG---CCGaCCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 30915 0.73 0.151708
Target:  5'- uGGCCGACGuUCGAcGCGGCgaacgcucGGCGCc -3'
miRNA:   3'- uCCGGCUGC-AGCU-CGCCGacc-----UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 30869 0.73 0.166981
Target:  5'- cGGCCGAggaguCGcCGAGCGGCcGGAuggugacgccgcucGCGCu -3'
miRNA:   3'- uCCGGCU-----GCaGCUCGCCGaCCU--------------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 30746 0.69 0.270581
Target:  5'- aGGGCCcgcuuaguacGACGUCGGGCGGUacGucagcaucaGGCGCa -3'
miRNA:   3'- -UCCGG----------CUGCAGCUCGCCGacC---------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 30438 0.69 0.283864
Target:  5'- cGGCCGGCGgguugUCGAucgGCGGCacGGugccGCGCa -3'
miRNA:   3'- uCCGGCUGC-----AGCU---CGCCGa-CCu---CGCG- -5'
24091 3' -61.6 NC_005262.1 + 29033 0.67 0.374341
Target:  5'- -cGCCGAgcUCGAGCGGCgccGGcacgacGCGCa -3'
miRNA:   3'- ucCGGCUgcAGCUCGCCGa--CCu-----CGCG- -5'
24091 3' -61.6 NC_005262.1 + 28859 0.67 0.382708
Target:  5'- cAGGUCGGCGgcgucacggaCGAGauGCUGGGaCGCa -3'
miRNA:   3'- -UCCGGCUGCa---------GCUCgcCGACCUcGCG- -5'
24091 3' -61.6 NC_005262.1 + 28366 0.8 0.048738
Target:  5'- cGaGCCGACGUCGAacacgaacacgucGCcgGGCUGGAGCGUg -3'
miRNA:   3'- uC-CGGCUGCAGCU-------------CG--CCGACCUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.