miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24091 3' -61.6 NC_005262.1 + 27971 0.69 0.283188
Target:  5'- aAGGCCGGCaUUG-GCuGGCUGGAaucgcagGUGCa -3'
miRNA:   3'- -UCCGGCUGcAGCuCG-CCGACCU-------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 27856 0.67 0.403292
Target:  5'- -uGCCG-CGUCGcaaggacggcggcaaGGCGGCc-GAGCGCa -3'
miRNA:   3'- ucCGGCuGCAGC---------------UCGCCGacCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 26542 0.66 0.463342
Target:  5'- cGGCCGuuGuUCGuGCGGUUcacgcGGAagGCGCg -3'
miRNA:   3'- uCCGGCugC-AGCuCGCCGA-----CCU--CGCG- -5'
24091 3' -61.6 NC_005262.1 + 24977 0.78 0.064339
Target:  5'- cAGGCCGGCuugGUCGAgGCGGCauucGAGCGCg -3'
miRNA:   3'- -UCCGGCUG---CAGCU-CGCCGac--CUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 24908 0.66 0.435447
Target:  5'- cGGCCagccggagGACGcCGAGgcaUGGCgGGAuGCGCa -3'
miRNA:   3'- uCCGG--------CUGCaGCUC---GCCGaCCU-CGCG- -5'
24091 3' -61.6 NC_005262.1 + 24327 0.66 0.434534
Target:  5'- uGGUCGGCGcgaUCGAcauGCGGCUcugcgucGGcGCGCc -3'
miRNA:   3'- uCCGGCUGC---AGCU---CGCCGA-------CCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 24138 0.71 0.227451
Target:  5'- cGGgUGACGUucgaggaUGGGCGGCaGGAGgCGCa -3'
miRNA:   3'- uCCgGCUGCA-------GCUCGCCGaCCUC-GCG- -5'
24091 3' -61.6 NC_005262.1 + 23355 0.68 0.35798
Target:  5'- cGGCCGGCGUgaagcgCGcGGCGGCgaaGGcccgcaacgugaAGCGCc -3'
miRNA:   3'- uCCGGCUGCA------GC-UCGCCGa--CC------------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 21431 0.68 0.311965
Target:  5'- cGGCCGACGUCc-GCGaGCUGGucgaguucCGCc -3'
miRNA:   3'- uCCGGCUGCAGcuCGC-CGACCuc------GCG- -5'
24091 3' -61.6 NC_005262.1 + 18889 0.68 0.352374
Target:  5'- -cGCCG-UGUCGAugaacuggucuugcaGCGGCUGGAacacauccuuguaGCGCu -3'
miRNA:   3'- ucCGGCuGCAGCU---------------CGCCGACCU-------------CGCG- -5'
24091 3' -61.6 NC_005262.1 + 18106 0.71 0.228016
Target:  5'- cGGCCGGCGUCGAcaauUGGgaGGguaucgacgaAGCGCu -3'
miRNA:   3'- uCCGGCUGCAGCUc---GCCgaCC----------UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 17594 0.71 0.228016
Target:  5'- -aGCUGGCGgCGcAGCGcgcggaGCUGGAGCGCc -3'
miRNA:   3'- ucCGGCUGCaGC-UCGC------CGACCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 17399 0.66 0.417398
Target:  5'- cGGCCGACaauGcCGAGaC-GCUGG-GCGCc -3'
miRNA:   3'- uCCGGCUG---CaGCUC-GcCGACCuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 17338 0.71 0.201194
Target:  5'- uGGCCGGCGcggcauUCGGGUccGGCgcgGGcGGCGCg -3'
miRNA:   3'- uCCGGCUGC------AGCUCG--CCGa--CC-UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 17290 0.69 0.283864
Target:  5'- cGGGCaggGGCGUC--GCGGUcGGAGUGCu -3'
miRNA:   3'- -UCCGg--CUGCAGcuCGCCGaCCUCGCG- -5'
24091 3' -61.6 NC_005262.1 + 17263 0.71 0.216941
Target:  5'- cGGCCGGCGcCGcGCugGGCUGcuGCGCg -3'
miRNA:   3'- uCCGGCUGCaGCuCG--CCGACcuCGCG- -5'
24091 3' -61.6 NC_005262.1 + 17222 0.66 0.444638
Target:  5'- cGGcGCUGGCGUCGuggucgucgugGGCGucGCgGGAGCGg -3'
miRNA:   3'- -UC-CGGCUGCAGC-----------UCGC--CGaCCUCGCg -5'
24091 3' -61.6 NC_005262.1 + 17081 0.66 0.426365
Target:  5'- uAGGCgCGccCGUCGAcGCGGC-GGGcCGCg -3'
miRNA:   3'- -UCCG-GCu-GCAGCU-CGCCGaCCUcGCG- -5'
24091 3' -61.6 NC_005262.1 + 15717 0.68 0.342128
Target:  5'- -cGUCGGCGcCGGGCGGCUcgucgcGGcaGGUGCg -3'
miRNA:   3'- ucCGGCUGCaGCUCGCCGA------CC--UCGCG- -5'
24091 3' -61.6 NC_005262.1 + 15588 0.72 0.19617
Target:  5'- gAGGCgCGcgcgcgcgaggaGCG-CGuGCGGCaGGAGCGCa -3'
miRNA:   3'- -UCCG-GC------------UGCaGCuCGCCGaCCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.